当前解析结果
SmilChr04G002962| 统一新 Gene ID | SmilChr04G002962 |
|---|---|
| 名称 | SmilChr04G002962 |
| 描述 | aminodeoxychorismate synthase, chloroplastic |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 46001952 - 46009264 / - |
| NCBI Gene ID | LOC131023767 |
|---|---|
| GeneID | 131023767 |
| locus_tag | - |
| NCBI Name | LOC131023767 |
| 原始查询 | LOC131023767 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aminodeoxychorismate synthase, chloroplastic |
| 产物 | aminodeoxychorismate synthase%2C chloroplastic |
| Arabidopsis | AT2G28880 (emb1997)para-aminobenzoate (PABA) synthase family protein [Source:NCBI gene (formerly Entrezgene);Acc:817437] identity=57.9; qcov=1.02; evalue=0; confidence=high |
| Rice | Os06g0699700- identity=71.9; qcov=0.316; evalue=6.08e-148; confidence=low |
| GO | GO:0000162 (L-tryptophan biosynthetic process); GO:0009396 (folic acid-containing compound biosynthetic process) |
| KEGG | smil00790 (Folate biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00117 (GATase); PF00425 (Chorismate_bind); PF30495 (Chorismate_bind_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023767 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057809332.1 |
| 2 | Mitochondrion | 线粒体 | 0.20000 | XP_057809332.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057809332.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057809332.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057809332.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:46002455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr4:46002612 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B29 |
Chr4:46002612 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B29 |
Chr4:46002615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr4:46002645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr4:46002729 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr4:46003206 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B90,B92,C87 |
Chr4:46003322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B126,B54,D6 |
Chr4:46003323 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr4:46003364 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B40,C42,C73 |
Chr4:46003410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C16,D3,D7 |
Chr4:46003444 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809332.1PF00117
GATase 87-248 aa
PF00117
GATase 285-322 aa
PF00425
Chorismate_bind 510-883 aa
PF30495
Chorismate_bind_2 572-882 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809332.1 |
Pfam | PF00117 |
GATase | Domain | 87 | 248 | 3.7e-40 | 138.3 | Glutamine amidotransferase class-I |
XP_057809332.1 |
Pfam | PF00117 |
GATase | Domain | 285 | 322 | 3.7e-40 | 138.3 | Glutamine amidotransferase class-I |
XP_057809332.1 |
Pfam | PF00425 |
Chorismate_bind | Domain | 510 | 883 | 8.7e-118 | 395.0 | chorismate binding enzyme |
XP_057809332.1 |
Pfam | PF30495 |
Chorismate_bind_2 | Domain | 572 | 882 | 2.3e-37 | 129.9 | Chorismate binding enzyme |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。