Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002972`

染色体: Chr04 坐标: 46086679-46089185 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002972`
名称	SmilChr04G002972
描述	plant intracellular Ras-group-related LRR protein 4-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	46086679 - 46089185 / `+`

ID 对照

NCBI Gene ID	`LOC131023781`
GeneID	`131023781`
locus_tag	`-`
NCBI Name	`LOC131023781`
原始查询	`LOC131023781`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	plant intracellular Ras-group-related LRR protein 4-like
产物	plant intracellular Ras-group-related LRR protein 4-like
Arabidopsis	`AT4G35470` (PIRL4) plant intracellular ras group-related LRR 4 [Source:NCBI gene (formerly Entrezgene);Acc:829699] identity=56.1; qcov=1; evalue=0; confidence=high
Rice	`Os08g0511700` (pi55-1) - identity=51; qcov=1.02; evalue=6.36e-176; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF12799 (LRR_4); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131023781

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057809351.1`
2	Cytosol	细胞质基质	0.40000	`XP_057809350.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057809350.1`
4	Nucleus	细胞核	0.00000	`XP_057809351.1`
5	Chromosome	染色体	0.00000	`XP_057809351.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:46087425`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B81,C58,C6
`Chr4:46087459`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr4:46087575`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:46087585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,B109,B112
`Chr4:46087632`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr4:46087775`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr4:46087786`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,B3,B51,B69
`Chr4:46087943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr4:46087959`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr4:46088003`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B33,B49,C32,C68
`Chr4:46088044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr4:46088065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809350.1

577 aa

288

577

LRR_8

LRR_14

LRR_4

LRR_1

LRR_8

LRR_14

LRR_1

LRR_8

PF13855 LRR_8 234-275 aa PF23598 LRR_14 234-317 aa PF12799 LRR_4 241-279 aa PF00560 LRR_1 264-285 aa PF13855 LRR_8 280-321 aa PF23598 LRR_14 281-361 aa PF00560 LRR_1 310-331 aa PF13855 LRR_8 311-367 aa

XP_057809351.1

545 aa

272

545

LRR_8

LRR_14

LRR_4

LRR_1

LRR_8

LRR_14

LRR_1

LRR_8

PF13855 LRR_8 234-275 aa PF23598 LRR_14 234-315 aa PF12799 LRR_4 241-279 aa PF00560 LRR_1 264-285 aa PF13855 LRR_8 280-321 aa PF23598 LRR_14 281-361 aa PF00560 LRR_1 310-331 aa PF13855 LRR_8 311-367 aa

XP_057809352.1

545 aa

272

545

LRR_8

LRR_14

LRR_4

LRR_1

LRR_8

LRR_14

LRR_1

LRR_8

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809350.1`	Pfam	`PF13855`	LRR_8	Repeat	234	275	3.5e-34	117.1	Leucine rich repeat
`XP_057809350.1`	Pfam	`PF23598`	LRR_14	Repeat	234	317	3.2e-36	125.5	Leucine-rich repeat region
`XP_057809350.1`	Pfam	`PF12799`	LRR_4	Repeat	241	279	8.5e-25	86.9	Leucine Rich repeats (2 copies)
`XP_057809350.1`	Pfam	`PF00560`	LRR_1	Repeat	264	285	8.9e-23	76.2	Leucine Rich Repeat
`XP_057809350.1`	Pfam	`PF13855`	LRR_8	Repeat	280	321	3.5e-34	117.1	Leucine rich repeat
`XP_057809350.1`	Pfam	`PF23598`	LRR_14	Repeat	281	361	3.2e-36	125.5	Leucine-rich repeat region
`XP_057809350.1`	Pfam	`PF00560`	LRR_1	Repeat	310	331	8.9e-23	76.2	Leucine Rich Repeat
`XP_057809350.1`	Pfam	`PF13855`	LRR_8	Repeat	311	367	3.5e-34	117.1	Leucine rich repeat
`XP_057809351.1`	Pfam	`PF13855`	LRR_8	Repeat	234	275	2.5e-34	117.5	Leucine rich repeat
`XP_057809351.1`	Pfam	`PF23598`	LRR_14	Repeat	234	315	2.2e-36	126.1	Leucine-rich repeat region
`XP_057809351.1`	Pfam	`PF12799`	LRR_4	Repeat	241	279	6.3e-25	87.4	Leucine Rich repeats (2 copies)
`XP_057809351.1`	Pfam	`PF00560`	LRR_1	Repeat	264	285	4.8e-23	77.0	Leucine Rich Repeat
`XP_057809351.1`	Pfam	`PF13855`	LRR_8	Repeat	280	321	2.5e-34	117.5	Leucine rich repeat
`XP_057809351.1`	Pfam	`PF23598`	LRR_14	Repeat	281	361	2.2e-36	126.1	Leucine-rich repeat region
`XP_057809351.1`	Pfam	`PF00560`	LRR_1	Repeat	310	331	4.8e-23	77.0	Leucine Rich Repeat
`XP_057809351.1`	Pfam	`PF13855`	LRR_8	Repeat	311	367	2.5e-34	117.5	Leucine rich repeat
`XP_057809352.1`	Pfam	`PF13855`	LRR_8	Repeat	234	275	2.5e-34	117.5	Leucine rich repeat
`XP_057809352.1`	Pfam	`PF23598`	LRR_14	Repeat	234	315	2.2e-36	126.1	Leucine-rich repeat region
`XP_057809352.1`	Pfam	`PF12799`	LRR_4	Repeat	241	279	6.3e-25	87.4	Leucine Rich repeats (2 copies)
`XP_057809352.1`	Pfam	`PF00560`	LRR_1	Repeat	264	285	4.8e-23	77.0	Leucine Rich Repeat
`XP_057809352.1`	Pfam	`PF13855`	LRR_8	Repeat	280	321	2.5e-34	117.5	Leucine rich repeat
`XP_057809352.1`	Pfam	`PF23598`	LRR_14	Repeat	281	361	2.2e-36	126.1	Leucine-rich repeat region
`XP_057809352.1`	Pfam	`PF00560`	LRR_1	Repeat	310	331	4.8e-23	77.0	Leucine Rich Repeat
`XP_057809352.1`	Pfam	`PF13855`	LRR_8	Repeat	311	367	2.5e-34	117.5	Leucine rich repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057953369.1
TAAAAACAACGTTGTTTTGATTAGATTAATATCTTATAGGGTGAAAATGCAATTCACAAATTTCTACGACTTCTAATCATAATTCGAGGTTTTTTTTTTTTTTTTTTCCTTAAATAAGAAATATTATGGGAAGACATGGAGGTTTGAAGGCGTAGGCGTGGATGCTCCACATTACAAGATTGAGACTGGAAAGTGGAAAGTGGAAACAAACAGCTGCAGTTGAGATTTGAAGTCAAAACAATCTCAAGATGTTGCAGTTA...

XM_057953367.1
AATATCTTATAGGGTGAAAATGCAATTCACAAATTTCTACGACTTCTAATCATAATTCGAGGTTTTTTTTTTTTTTTTTTCCTTAAATAAGAAATATTATGGGAAGACATGGAGGTTTGAAGGCGTAGGCGTGGATGCTCCACATTACAAGATTGAGACTGGAAAGTGGAAAGTGGAAACAAACAGCTGCAGTTGAGATTTGAAGTCAAAACAATCTCAAGATGTTGCAGTTACCAAATGCAGTAAATGAATAACCGAAA...

CDS

3 records

下载 CDS FASTA

LOC131023781
ATGATGATGGAGGCCTCGGCCTCGGCCTCAGGCATGAGTGTCGAAAAAGCTGTGCAAGAGGTGATGAGAATGCACAAGTCGTTGCCAGCCCGGCCCGGGATCGAGGAAGTGGAAGCGGCCCGAAGTTTGATCCAGAATGTGGAGATGGAAGACGCCTTAAAACTGGAGAGAATCGCTCAGCGAAACACAGCAAAAAGAATCCCAGAAGAATTGCTGAGAATTGTGCAAGAAATGCAGAGGACTCTGATTGATTTGCAGAG...

Protein

3 records

下载 Protein FASTA

XP_057809350.1
MMMEASASASGMSVEKAVQEVMRMHKSLPARPGIEEVEAARSLIQNVEMEDALKLERIAQRNTAKRIPEELLRIVQEMQRTLIDLQSKEQKKEAQKVLDVESAHLLFDEMIQRASVCLKSSKSKTATTSSLATLDKTLPPPSPHSYEEPMKAKDDSYVNKPFKASALRLDRVGAKPPSRGDVPTAPPLVDSAVDHGEKMNLIKLASCIEVSVKKGARELILQGKLSDQVEWLPDSIGKLSTLIKLDLSENAITMLPAAIG...

XP_057809351.1
MMMEASASASGMSVEKAVQEVMRMHKSLPARPGIEEVEAARSLIQNVEMEDALKLERIAQRNTAKRIPEELLRIVQEMQRTLIDLQSKEQKKEAQKVLDVESAHLLFDEMIQRASVCLKSSKSKTATTSSLATLDKTLPPPSPHSYEEPMKAKDDSYVNKPFKASALRLDRVGAKPPSRGDVPTAPPLVDSAVDHGEKMNLIKLASCIEVSVKKGARELILQGKLSDQVEWLPDSIGKLSTLIKLDLSENAITMLPAAIG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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