Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003011`

染色体: Chr04 坐标: 46507061-46511255 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003011`
名称	SmilChr04G003011
描述	la-related protein 1B-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	46507061 - 46511255 / `-`

ID 对照

NCBI Gene ID	`LOC131023815`
GeneID	`131023815`
locus_tag	`-`
NCBI Name	`LOC131023815`
原始查询	`LOC131023815`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	la-related protein 1B-like
产物	la-related protein 1B-like
Arabidopsis	`AT4G35890` (LARP1c) winged-helix DNA-binding transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:829743] identity=34.6; qcov=0.892; evalue=3.97e-54; confidence=low
Rice	`Os03g0156500` - identity=40.6; qcov=0.341; evalue=9.58e-31; confidence=low
GO	GO:0003723 (RNA binding)
KEGG	-
Pfam	PF05383 (La)
InterPro	-
eggNOG	-
NR	GeneID:131023815

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057809401.1`
2	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.80000	`XP_057809401.1`
3	Cytoplasmic granule	细胞质颗粒	0.60000	`XP_057809402.1`
4	P-body	P-body	0.60000	`XP_057809401.1`
5	Cytosol	细胞质基质	0.40000	`XP_057809401.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:46507587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr4:46509477`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B124
`Chr4:46509477`	`GC`	`G`	1bp_deletion	CDS_variant	1	B124
`Chr4:46509584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr4:46509655`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B74
`Chr4:46509655`	`GC`	`G`	1bp_deletion	CDS_variant	1	B74
`Chr4:46509687`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,B34
`Chr4:46509693`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr4:46509732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B40,C44,C52
`Chr4:46509791`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B20,B50,B7,C75
`Chr4:46510648`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C59,C81,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809401.1

502 aa

251

502

PF05383 La 388-443 aa

XP_057809402.1

499 aa

250

499

PF05383 La 388-440 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809401.1`	Pfam	`PF05383`	La	Domain	388	443	4.3e-22	78.5	La domain
`XP_057809402.1`	Pfam	`PF05383`	La	Domain	388	440	1.6e-18	67.0	La domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953418.1
CGTCGTTATACATACAAATTAAATAAATACTATATGTAGTTTTTACCCCATATTAAAAAAAAAATGAAATTCAGTGGGTAATATTTAGTGCTAAGCAAAGAATAAGGAGAAAGCTACTGAGAGAGAGAGAGAGAGAGAGGGAGCCAGAGTTGTTTTTCTCTGTAGAAGAAGAAAAAAAGGGAAACTTGAGAGACGAGAAAAAATCTCTCCGTCTCTTCTCTTTCGATCGATTCTGATCGATTTTTGGAATGTTCTTTTGA...

XM_057953419.1
ACTGAGAGAGAGAGAGAGAGAGAGGGAGCCAGAGTTGTTTTTCTCTGTAGAAGAAGAAAAAAAGGGAAACTTGAGAGACGAGAAAAAATCTCTCCGTCTCTTCTCTTTCGATCGATTCTGATCGATTTTTGGAATGTTCTTTTGATCGATTCGATTGGATTCGATTCGATTGTATTTTTATTTCTTTCTCATTACTATTTCTTTCGATTTTTTTCTTTTAGTTTAATTGATCAGCTCTAACCGAAGTGTTTGTTTTGGAT...

CDS

2 records

下载 CDS FASTA

LOC131023815
ATGGCGACGGCCTCAGACGCTTCCTCTGCCCCTATTCAAGCTCAAAATTCTCCTAGGGGTCGCCAATCAAGGAGGTCGTCGGCGGCGCGTGGCGTGCCTTCCCCCTCTGCCTCTCCTCCGTCTCTTCCGATTTCGGGAATCGTTGATCAGGAACAATTTTTGACTTCCTCTTCTTCTACGTCTTCGGATTCCTTACCTATCAAAGAAGCCAACTCAGTGGGAGATGATGGTTTGGCCGCGGCGGCAGGTGAAGATTTTCA...

Protein

2 records

下载 Protein FASTA

XP_057809401.1
MATASDASSAPIQAQNSPRGRQSRRSSAARGVPSPSASPPSLPISGIVDQEQFLTSSSSTSSDSLPIKEANSVGDDGLAAAAGEDFQLENGENGAAGKKPVWNKPSNAAAAEAAGAVMGAESWPALAESARASPKSPSTYSLKPISHGSISISQEDLTGGSLSSPKEVSSSISSPNAVSNHVISSRPKRESIKRSSGSSSSPHMPATDNFSQAPLVQHGTVVDSPTHSTGKLSAGEPSRDSNTTNKEGGQRGVSYSANET...

XP_057809402.1
MATASDASSAPIQAQNSPRGRQSRRSSAARGVPSPSASPPSLPISGIVDQEQFLTSSSSTSSDSLPIKEANSVGDDGLAAAAGEDFQLENGENGAAGKKPVWNKPSNAAAAEAAGAVMGAESWPALAESARASPKSPSTYSLKPISHGSISISQEDLTGGSLSSPKEVSSSISSPNAVSNHVISSRPKRESIKRSSGSSSSPHMPATDNFSQAPLVQHGTVVDSPTHSTGKLSAGEPSRDSNTTNKEGGQRGVSYSANET...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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