当前解析结果
SmilChr01G002146| 统一新 Gene ID | SmilChr01G002146 |
|---|---|
| 名称 | SmilChr01G002146 |
| 描述 | pentatricopeptide repeat-containing protein At2g36730-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 37446978 - 37449245 / + |
| NCBI Gene ID | LOC131023856 |
|---|---|
| GeneID | 131023856 |
| locus_tag | - |
| NCBI Name | LOC131023856 |
| 原始查询 | LOC131023856 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At2g36730-like |
| 产物 | pentatricopeptide repeat-containing protein At2g36730-like |
| Arabidopsis | AT2G36730 (AT2G36730)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818245] identity=39.4; qcov=0.922; evalue=1.02e-95; confidence=medium |
| Rice | Os03g0821700 (OJ1754_E06.32)- identity=37.7; qcov=0.994; evalue=6.21e-85; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023856 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057809461.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057809461.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057809461.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057809461.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057809461.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:37447180 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B138,B64,C65,C9 |
Chr1:37447472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B104 |
Chr1:37448340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr1:37448344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr1:37448485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr1:37448512 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C14 |
Chr1:37448512 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C14 |
Chr1:37448528 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr1:37448598 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C18,C75 |
Chr1:37448601 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | C64,C66 |
Chr1:37448601 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr1:37448628 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C14,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809461.1PF01535
PPR 147-174 aa
PF13041
PPR_2 172-220 aa
PF13812
PPR_3 172-220 aa
PF01535
PPR 175-200 aa
PF01535
PPR 248-274 aa
PF13041
PPR_2 275-322 aa
PF01535
PPR 277-303 aa
PF01535
PPR 312-338 aa
PF01535
PPR 349-374 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809461.1 |
Pfam | PF01535 |
PPR | Repeat | 147 | 174 | 3.1e-33 | 112.4 | PPR repeat |
XP_057809461.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 172 | 220 | 9.4e-36 | 122.4 | PPR repeat family |
XP_057809461.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 172 | 220 | 7e-12 | 46.0 | Pentatricopeptide repeat domain |
XP_057809461.1 |
Pfam | PF01535 |
PPR | Repeat | 175 | 200 | 3.1e-33 | 112.4 | PPR repeat |
XP_057809461.1 |
Pfam | PF01535 |
PPR | Repeat | 248 | 274 | 3.1e-33 | 112.4 | PPR repeat |
XP_057809461.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 275 | 322 | 9.4e-36 | 122.4 | PPR repeat family |
XP_057809461.1 |
Pfam | PF01535 |
PPR | Repeat | 277 | 303 | 3.1e-33 | 112.4 | PPR repeat |
XP_057809461.1 |
Pfam | PF01535 |
PPR | Repeat | 312 | 338 | 3.1e-33 | 112.4 | PPR repeat |
XP_057809461.1 |
Pfam | PF01535 |
PPR | Repeat | 349 | 374 | 3.1e-33 | 112.4 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。