Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003068`

染色体: Chr04 坐标: 47215188-47223158 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003068`
名称	SmilChr04G003068
描述	RNA-binding KH domain-containing protein RCF3-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	47215188 - 47223158 / `+`

ID 对照

NCBI Gene ID	`LOC131023864`
GeneID	`131023864`
locus_tag	`-`
NCBI Name	`LOC131023864`
原始查询	`LOC131023864`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RNA-binding KH domain-containing protein RCF3-like
产物	RNA-binding KH domain-containing protein RCF3-like
Arabidopsis	`AT5G15270` (AT5G15270) RNA-binding KH domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831379] identity=41.7; qcov=0.685; evalue=1.73e-100; confidence=medium
Rice	`Os10g0495000` (OSJNBa0041P03.3) - identity=48.4; qcov=0.733; evalue=4.13e-127; confidence=high
GO	GO:0003729 (mRNA binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0010468 (regulation of gene expression)
KEGG	-
Pfam	PF00013 (KH_1)
InterPro	-
eggNOG	-
NR	GeneID:131023864

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809472.1`
2	Chromosome	染色体	0.00000	`XP_057809472.1`
3	Centromere	着丝粒	0.00000	`XP_057809472.1`
4	Chromatin	染色质	0.00000	`XP_057809472.1`
5	Telomere	端粒	0.00000	`XP_057809472.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:47217023`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:47217534`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B54
`Chr4:47217534`	`TG`	`T`	1bp_deletion	CDS_variant	1	B54
`Chr4:47219118`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,B34,B36,C54
`Chr4:47219208`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B100,B104,B50,B6,C63
`Chr4:47219226`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,D7
`Chr4:47219256`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr4:47219287`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B104,B50,B6,C63
`Chr4:47219353`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B50,B6,C63
`Chr4:47219571`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:47219666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr4:47219733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B102,C20,C55,C59,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809472.1

651 aa

326

651

KH_1

PF00013 KH_1 47-99 aa PF00013 KH_1 155-222 aa PF00013 KH_1 306-356 aa PF00013 KH_1 388-455 aa

XP_057809473.1

651 aa

326

651

KH_1

PF00013 KH_1 47-99 aa PF00013 KH_1 155-222 aa PF00013 KH_1 306-356 aa PF00013 KH_1 388-455 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809472.1`	Pfam	`PF00013`	KH_1	Domain	47	99	1.7e-57	191.8	KH domain
`XP_057809472.1`	Pfam	`PF00013`	KH_1	Domain	155	222	1.7e-57	191.8	KH domain
`XP_057809472.1`	Pfam	`PF00013`	KH_1	Domain	306	356	1.7e-57	191.8	KH domain
`XP_057809472.1`	Pfam	`PF00013`	KH_1	Domain	388	455	1.7e-57	191.8	KH domain
`XP_057809473.1`	Pfam	`PF00013`	KH_1	Domain	47	99	1.7e-57	191.8	KH domain
`XP_057809473.1`	Pfam	`PF00013`	KH_1	Domain	155	222	1.7e-57	191.8	KH domain
`XP_057809473.1`	Pfam	`PF00013`	KH_1	Domain	306	356	1.7e-57	191.8	KH domain
`XP_057809473.1`	Pfam	`PF00013`	KH_1	Domain	388	455	1.7e-57	191.8	KH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953490.1
CCCAAAATCAACGCCCACTGCGTCTCTTAACTTCCCAAAACTATCACCAAAAAATATAATCGTGCGAAAAAATAAGAACTAAAAGCCCTAACTCTGTCGGGGCGCTCTCTTTCATACTGGCGATGGAGAAAATGCAAAATCTCTAACAAAACCCCGCTATCTTATTCTGAGACTGCTTTGAGCTAGGGCTCGAGCTTATGTGTGATACATGCCTCTCTTACTCATGTAGTGGAGTGGGGCGGATATTTTCGATAATGATG...

XM_057953489.1
CCCAAAATCAACGCCCACTGCGTCTCTTAACTTCCCAAAACTATCACCAAAAAATATAATCGTGCGAAAAAATAAGAACTAAAAGCCCTAACTCTGTCGGGGCGCTCTCTTTCATACTGGCGATGGAGAAAATGCAAAATCTCTAACAAAACCCCGCTATCTTATTCTGAGACTGGTCTCATTAAATTCGATTCCTTTAATTAGAATAGCAATAACCAGGAGCAAATTTTATCAAGTCATGGAAGGAAACAGAAGAACCT...

CDS

2 records

下载 CDS FASTA

LOC131023864
ATGGAAGGAAACAGAAGAACCTTTCTTAATAAACATTCTAATCCACAGTTCAAGAAGACAGCAGGTCTCAGGAAAGGAAAGCAATATAATTCTATTCGTGAAGAATTTTCTGAGAACTTTCATTCATCAGATACTGTTTACCGAATTCTTTGCCAGTCTAAAAAGATTGGTAGTGTAATTGGAAAAGGTGGTAACATAGTGAAAGCCCTCAGGGAAGAGACTGAAGCAAAGATTACTGTTTCTGACTCTGTTATTGGCTC...

Protein

2 records

下载 Protein FASTA

XP_057809472.1
MEGNRRTFLNKHSNPQFKKTAGLRKGKQYNSIREEFSENFHSSDTVYRILCQSKKIGSVIGKGGNIVKALREETEAKITVSDSVIGSDERVILICSPSDKQAKRQTACNDRQVERDVVEPHCAAQDALLKVHDRIIEEDLGGPEKNNRSETVVSARLLVSNNLVGCLLGRKGDVIQRLRSETGANIRVLPADHLPACATSNDELVQISGKPAVVKKALYEISTLLHQNPWKDKPSLSYPTNYAGQEFHPSGPPMRPMLPP...

XP_057809473.1
MEGNRRTFLNKHSNPQFKKTAGLRKGKQYNSIREEFSENFHSSDTVYRILCQSKKIGSVIGKGGNIVKALREETEAKITVSDSVIGSDERVILICSPSDKQAKRQTACNDRQVERDVVEPHCAAQDALLKVHDRIIEEDLGGPEKNNRSETVVSARLLVSNNLVGCLLGRKGDVIQRLRSETGANIRVLPADHLPACATSNDELVQISGKPAVVKKALYEISTLLHQNPWKDKPSLSYPTNYAGQEFHPSGPPMRPMLPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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