Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003071`

染色体: Chr04 坐标: 47254899-47266853 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003071`
名称	SmilChr04G003071
描述	protein FAR1-RELATED SEQUENCE 3-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	47254899 - 47266853 / `+`

ID 对照

NCBI Gene ID	`LOC131023867`
GeneID	`131023867`
locus_tag	`-`
NCBI Name	`LOC131023867`
原始查询	`LOC131023867`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR1-RELATED SEQUENCE 3-like
产物	protein FAR1-RELATED SEQUENCE 3-like
Arabidopsis	`AT2G27110` (FRS3) FAR1-related sequence 3 [Source:NCBI gene (formerly Entrezgene);Acc:817253] identity=51.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0655600` - identity=38.1; qcov=0.821; evalue=1.13e-159; confidence=medium
GO	GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF03101 (FAR1); PF04434 (SWIM); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like)
InterPro	-
eggNOG	-
NR	GeneID:131023867

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809475.1`
2	Chromosome	染色体	0.00000	`XP_057809475.1`
3	Centromere	着丝粒	0.00000	`XP_057809475.1`
4	Chromatin	染色质	0.00000	`XP_057809475.1`
5	Telomere	端粒	0.00000	`XP_057809475.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:47255961`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,C13
`Chr4:47256013`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr4:47256722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B134
`Chr4:47257166`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr4:47257287`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:47257571`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B74,C71
`Chr4:47257775`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr4:47257857`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B98,D7
`Chr4:47258126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B118,B140,C5
`Chr4:47258155`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B130,D7
`Chr4:47258618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809475.1

877 aa

438

877

FAR1

ZSWIM1-3_RNaseH-like

MULE

SWIM

PF03101 FAR1 60-135 aa PF21056 ZSWIM1-3_RNaseH-like 255-377 aa PF10551 MULE 295-386 aa PF04434 SWIM 575-606 aa

XP_057809476.1

877 aa

438

877

FAR1

ZSWIM1-3_RNaseH-like

MULE

SWIM

PF03101 FAR1 60-135 aa PF21056 ZSWIM1-3_RNaseH-like 255-377 aa PF10551 MULE 295-386 aa PF04434 SWIM 575-606 aa

XP_057809477.1

877 aa

438

877

FAR1

ZSWIM1-3_RNaseH-like

MULE

SWIM

PF03101 FAR1 60-135 aa PF21056 ZSWIM1-3_RNaseH-like 255-377 aa PF10551 MULE 295-386 aa PF04434 SWIM 575-606 aa

XP_057809478.1

877 aa

438

877

FAR1

ZSWIM1-3_RNaseH-like

MULE

SWIM

PF03101 FAR1 60-135 aa PF21056 ZSWIM1-3_RNaseH-like 255-377 aa PF10551 MULE 295-386 aa PF04434 SWIM 575-606 aa

XP_057809479.1

877 aa

438

877

FAR1

ZSWIM1-3_RNaseH-like

MULE

SWIM

PF03101 FAR1 60-135 aa PF21056 ZSWIM1-3_RNaseH-like 255-377 aa PF10551 MULE 295-386 aa PF04434 SWIM 575-606 aa

XP_057809480.1

844 aa

422

844

FAR1

ZSWIM1-3_RNaseH-like

MULE

SWIM

PF03101 FAR1 60-135 aa PF21056 ZSWIM1-3_RNaseH-like 255-377 aa PF10551 MULE 295-386 aa PF04434 SWIM 575-606 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809475.1`	Pfam	`PF03101`	FAR1	Domain	60	135	3.1e-14	54.1	FAR1 DNA-binding domain
`XP_057809475.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	255	377	4.5e-08	33.8	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057809475.1`	Pfam	`PF10551`	MULE	Domain	295	386	9.6e-29	100.4	MULE transposase domain
`XP_057809475.1`	Pfam	`PF04434`	SWIM	Domain	575	606	8.9e-10	38.6	SWIM zinc finger
`XP_057809476.1`	Pfam	`PF03101`	FAR1	Domain	60	135	3.1e-14	54.1	FAR1 DNA-binding domain
`XP_057809476.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	255	377	4.5e-08	33.8	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057809476.1`	Pfam	`PF10551`	MULE	Domain	295	386	9.6e-29	100.4	MULE transposase domain
`XP_057809476.1`	Pfam	`PF04434`	SWIM	Domain	575	606	8.9e-10	38.6	SWIM zinc finger
`XP_057809477.1`	Pfam	`PF03101`	FAR1	Domain	60	135	3.1e-14	54.1	FAR1 DNA-binding domain
`XP_057809477.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	255	377	4.5e-08	33.8	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057809477.1`	Pfam	`PF10551`	MULE	Domain	295	386	9.6e-29	100.4	MULE transposase domain
`XP_057809477.1`	Pfam	`PF04434`	SWIM	Domain	575	606	8.9e-10	38.6	SWIM zinc finger
`XP_057809478.1`	Pfam	`PF03101`	FAR1	Domain	60	135	3.1e-14	54.1	FAR1 DNA-binding domain
`XP_057809478.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	255	377	4.5e-08	33.8	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057809478.1`	Pfam	`PF10551`	MULE	Domain	295	386	9.6e-29	100.4	MULE transposase domain
`XP_057809478.1`	Pfam	`PF04434`	SWIM	Domain	575	606	8.9e-10	38.6	SWIM zinc finger
`XP_057809479.1`	Pfam	`PF03101`	FAR1	Domain	60	135	3.1e-14	54.1	FAR1 DNA-binding domain
`XP_057809479.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	255	377	4.5e-08	33.8	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057809479.1`	Pfam	`PF10551`	MULE	Domain	295	386	9.6e-29	100.4	MULE transposase domain
`XP_057809479.1`	Pfam	`PF04434`	SWIM	Domain	575	606	8.9e-10	38.6	SWIM zinc finger
`XP_057809480.1`	Pfam	`PF03101`	FAR1	Domain	60	135	2.9e-14	54.3	FAR1 DNA-binding domain
`XP_057809480.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	255	377	3e-08	34.4	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057809480.1`	Pfam	`PF10551`	MULE	Domain	295	386	9e-29	100.4	MULE transposase domain
`XP_057809480.1`	Pfam	`PF04434`	SWIM	Domain	575	606	8.5e-10	38.7	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

14 records

下载 cDNA FASTA

XR_009101551.1
CTAAGAAGTAAGAACATAGAGGAAAAATGGGTGAGTTTGTGCGTGCGTTGTGTTTGTATGTGGGCAGTCTCCTGACTCCATAGAATTAGAGTGAAGCAATTGAAGAAATCTTCTCCCAAATTACAGACCCATTCCCAGACACTCAACGGAGGGAGTGTGTGTACGCGCGAGAGAGAGCAATTTGACTCGGTAATGAATGATTGAGGCGTTGCAATTCTCAGAGTCGAAAATCCAGTGCTGATCACCCCCCTCCGTTTCCA...

XR_009101550.1
CTAAGAAGTAAGAACATAGAGGAAAAATGGGTGAGTTTGTGCGTGCGTTGTGTTTGTATGTGGGCAGTCTCCTGACTCCATAGAATTAGAGTGAAGCAATTGAAGAAATCTTCTCCCAAATTACAGACCCATTCCCAGACACTCAACGGAGGGAGTGTGTGTACGCGCGAGAGAGAGCAATTTGACTCGGTAATGAATGATTGAGGCGTTGCAATTCTCAGAGTCGAAAATCCAGTGCTGATCACCCCCCTCCGTTTCCA...

CDS

6 records

下载 CDS FASTA

LOC131023867
ATGGATAATGAAGTTGTGGAGGTAGATATGCAGAAAAGGCAAAAGAGTAGGGAAGCTCCAACCCAACATGGAGATGATGAGGCTGAAAATTTAAGTGGAATTTCTACCAGTCAGGCTGATGCTGGGAATAATAAACCATATGTTAATATGGAGTTTGAATCTCAAGAAGCTGCAAGGGAGTTCTATGATTCATATGCCAGGCAAGAGGGTTTTAGCACTCATGTTGGTCAATATACCCGAAATAAGCCTGATGGTCCGAT...

Protein

6 records

下载 Protein FASTA

XP_057809475.1
MDNEVVEVDMQKRQKSREAPTQHGDDEAENLSGISTSQADAGNNKPYVNMEFESQEAAREFYDSYARQEGFSTHVGQYTRNKPDGPIVSWEFFCSSEVFKRKNVESCNAMLQIERKDTGTWVVTKFVEDHNHSIVSPSKVHFLRPRRHFAGATKNALPESADNQNDVMVSVDGNHVLYDSNLVMRNTSPIEANPVAKNMSPAETISVGRTASCVETSRATTSSVPVMPLQYIQPSSRRRALGRDAHDLLTYFRKMQAENP...

XP_057809476.1
MDNEVVEVDMQKRQKSREAPTQHGDDEAENLSGISTSQADAGNNKPYVNMEFESQEAAREFYDSYARQEGFSTHVGQYTRNKPDGPIVSWEFFCSSEVFKRKNVESCNAMLQIERKDTGTWVVTKFVEDHNHSIVSPSKVHFLRPRRHFAGATKNALPESADNQNDVMVSVDGNHVLYDSNLVMRNTSPIEANPVAKNMSPAETISVGRTASCVETSRATTSSVPVMPLQYIQPSSRRRALGRDAHDLLTYFRKMQAENP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器