Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003114`

染色体: Chr04 坐标: 47699851-47702672 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003114`
名称	SmilChr04G003114
描述	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	47699851 - 47702672 / `+`

ID 对照

NCBI Gene ID	`LOC131023911`
GeneID	`131023911`
locus_tag	`-`
NCBI Name	`LOC131023911`
原始查询	`LOC131023911`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
产物	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Arabidopsis	`AT5G66730` (IDD1) C2H2-like zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:836806] identity=53.4; qcov=1.07; evalue=4.83e-165; confidence=high
Rice	`Os03g0197800` (OsIDD1) - identity=88; qcov=0.35; evalue=6.44e-112; confidence=low
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus)
KEGG	-
Pfam	PF00096 (zf-C2H2); PF22992 (C2CH-4th_BIRD-IDD); PF22995 (C2CH-3rd_BIRD-IDD); PF22996 (C2H2-2nd_BIRD-IDD)
InterPro	-
eggNOG	-
NR	GeneID:131023911

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809538.1`
2	Chromosome	染色体	0.00000	`XP_057809538.1`
3	Centromere	着丝粒	0.00000	`XP_057809538.1`
4	Chromatin	染色质	0.00000	`XP_057809538.1`
5	Telomere	端粒	0.00000	`XP_057809538.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:47700653`	`ACG`	`A`	2bp_deletion	frameshift_variant	49	A14,A19,A2,B102,B104,B106,B109,B117,B119,B12,B126,B129,B13,B130,B131,B20,B22,B23,B28,B37,B4,B48,B5,B51,B60,B65,B7,B75,B76,B9,B91,C10,C19,C20,C21,C23,C37,C38,C45,C48,C6,C60,C77,C8,C83,D10,D2,D5,D9
`Chr4:47700725`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C77,D10
`Chr4:47700761`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C77,D10
`Chr4:47700802`	`T`	`TTA`	2bp_insertion	frameshift_variant	3	C23,C37,C38
`Chr4:47700802`	`T`	`TTA`	2bp_insertion	CDS_variant	3	C23,C37,C38
`Chr4:47700909`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr4:47701726`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,B35,B88
`Chr4:47701774`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,B35,B88
`Chr4:47701810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B59,B86
`Chr4:47701834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr4:47702101`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr4:47702425`	`GC`	`G`	1bp_deletion	frameshift_variant	2	B34,B43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809538.1

500 aa

250

500

zf-C2H2

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF00096 zf-C2H2 53-75 aa PF22996 C2H2-2nd_BIRD-IDD 90-124 aa PF22995 C2CH-3rd_BIRD-IDD 128-152 aa PF22992 C2CH-4th_BIRD-IDD 155-192 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809538.1`	Pfam	`PF00096`	zf-C2H2	Domain	53	75	4.4e-09	37.0	Zinc finger, C2H2 type
`XP_057809538.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	90	124	3.2e-22	79.0	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057809538.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	128	152	1.1e-14	54.4	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057809538.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	155	192	1.3e-22	80.1	BIRD-IDD transcription factor, fourth C2HC zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953555.1
AAAATGGATGCAAATAAGCCTGAAAAAGTTAAAAGTGGGTTATGTGAAGACCAAAAAGGCAACAACGAAGACTTTTGCAAACACAGACACACACACACTCTCTCTCTCTAAAATTTCTCTCTCTAATTATCTGACTTGCCGCCGACCCTCAAAAGCCACTCTTCCTCCAGTCGGCGTGGTTCTGAACGGCGCCGCCGCAGCAGAATCAAGCTGAAATATTTCGCTGTCTAACGCGTTCGAACATGCCACCGCGCGTAGGT...

CDS

1 records

下载 CDS FASTA

LOC131023911
ATGAATGAGTCGGCAGCTTCTGGCGACTCTTCTTCAGGTAATCAAACAACCCCTCCAAAACCAACTGCAAAGAAGAAACGGAATCTGCCTGGAATGCCAGATCCTGACGCCGAGGTGATTGCCCTATCGCCGAAGACGTTGATGGCGACGAATAGATTTGTGTGCGAAATCTGCAACAAAGGTTTCCAAAGGGATCAGAATCTGCAGCTGCATCGGAGGGGTCACAATCTGCCATGGAAGCTGCGGCAGAGATCGAGTAA...

Protein

1 records

下载 Protein FASTA

XP_057809538.1
MNESAASGDSSSGNQTTPPKPTAKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKDVKKRVYVCPEPSCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCQCGTVFSRRDSYITHRAFCDALADESAKAPSATEPAADADQDLEAGVSSLPPPPPEEDPSPPADVAPSILPDNSNDNNSDHVTELLDSTTANPSSSQILEEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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