当前解析结果
SmilChr01G002159| 统一新 Gene ID | SmilChr01G002159 |
|---|---|
| 名称 | SmilChr01G002159 |
| 描述 | chlorophyllide a oxygenase, chloroplastic |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 37593727 - 37597416 / - |
| NCBI Gene ID | LOC131023916 |
|---|---|
| GeneID | 131023916 |
| locus_tag | - |
| NCBI Name | LOC131023916 |
| 原始查询 | LOC131023916 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | chlorophyllide a oxygenase, chloroplastic |
| 产物 | chlorophyllide a oxygenase%2C chloroplastic |
| Arabidopsis | AT1G44446 (CH1)Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:841029] identity=75.9; qcov=1.01; evalue=0; confidence=high |
| Rice | Os10g0567400 (CAO)- identity=73.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0009507 (chloroplast); GO:0010277 (chlorophyllide a oxygenase activity); GO:0015995 (chlorophyll biosynthetic process); GO:0051537 (2 iron, 2 sulfur cluster binding) |
| KEGG | smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00355 (Rieske); PF08417 (PaO); PF19112 (VanA_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023916 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057809553.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.80000 | XP_057809553.1 |
| 3 | Chloroplast thylakoid | 类囊体 | 0.80000 | XP_057809553.1 |
| 4 | Chloroplast thylakoid membrane | 类囊体膜 | 0.20000 | XP_057809553.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057809553.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:37594219 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:37594575 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | A22 |
Chr1:37594575 |
TC |
T |
1bp_deletion | CDS_variant | 1 | A22 |
Chr1:37594776 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B9,C3 |
Chr1:37594833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr1:37595247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B74,B89,C5 |
Chr1:37595307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr1:37595340 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B135,B53,C65 |
Chr1:37595611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C16,D11 |
Chr1:37596415 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B110,B112,B126,B88,C6 |
Chr1:37596464 |
G |
A |
EMS_canonical_SNV | stop_gained | 33 | A20,A21,A23,A5,B128,B135,B140,B26,B33,B43,B44,B48,B54,B58,B60,B64,B67,B68,B71,B75,B90,C2,C25,C27,C33,C53,C64,C68,C70,C78,C84,C87,D2 |
Chr1:37597174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A18,B64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809553.1PF00355
Rieske 217-298 aa
PF19112
VanA_C 401-520 aa
PF08417
PaO 404-498 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809553.1 |
Pfam | PF00355 |
Rieske | Domain | 217 | 298 | 1.8e-24 | 86.1 | Rieske [2Fe-2S] domain |
XP_057809553.1 |
Pfam | PF19112 |
VanA_C | Domain | 401 | 520 | 8.9e-15 | 56.0 | Vanillate O-demethylase oxygenase C-terminal domain |
XP_057809553.1 |
Pfam | PF08417 |
PaO | Family | 404 | 498 | 2.4e-17 | 63.5 | Pheophorbide a oxygenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。