Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003142`

染色体: Chr04 坐标: 47993151-48004402 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003142`
名称	SmilChr04G003142
描述	ubiquitin receptor RAD23c-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	47993151 - 48004402 / `+`

ID 对照

NCBI Gene ID	`LOC131023937`
GeneID	`131023937`
locus_tag	`-`
NCBI Name	`LOC131023937`
原始查询	`LOC131023937`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin receptor RAD23c-like
产物	ubiquitin receptor RAD23c-like
Arabidopsis	`AT3G02540` (RAD23C) Rad23 UV excision repair protein family [Source:NCBI gene (formerly Entrezgene);Acc:821195] identity=67.5; qcov=1.11; evalue=0; confidence=high
Rice	`Os09g0407200` (OsRAD23) - identity=63.7; qcov=1.04; evalue=4.72e-166; confidence=high
GO	GO:0003684 (damaged DNA binding); GO:0005654 (nucleoplasm); GO:0005829 (cytosol); GO:0006289 (nucleotide-excision repair); GO:0031593 (polyubiquitin modification-dependent protein binding); GO:0043130 (ubiquitin binding); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process); GO:0070628 (proteasome binding)
KEGG	smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF00240 (ubiquitin); PF00627 (UBA); PF09280 (XPC-binding); PF11976 (Rad60-SLD)
InterPro	-
eggNOG	-
NR	GeneID:131023937

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057809582.1`
2	Nucleoplasm	核质	1.00000	`XP_057809582.1`
3	Cytoplasm	细胞质	1.00000	`XP_057809582.1`
4	Cytosol	细胞质基质	1.00000	`XP_057809582.1`
5	Nucleus membrane	核膜	0.40000	`XP_057809582.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:47994587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr4:47994640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B17,C11,C26,C69
`Chr4:48000254`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr4:48001360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B50,B6,C63
`Chr4:48002052`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr4:48002108`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809582.1

382 aa

191

382

Rad60-SLD

ubiquitin

UBA

XPC-binding

UBA

PF11976 Rad60-SLD 1-73 aa PF00240 ubiquitin 3-76 aa PF00627 UBA 157-194 aa PF09280 XPC-binding 258-313 aa PF00627 UBA 338-373 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809582.1`	Pfam	`PF11976`	Rad60-SLD	Family	1	73	6.9e-08	32.9	Ubiquitin-2 like Rad60 SUMO-like
`XP_057809582.1`	Pfam	`PF00240`	ubiquitin	Domain	3	76	7.4e-20	71.2	Ubiquitin family
`XP_057809582.1`	Pfam	`PF00627`	UBA	Domain	157	194	1.9e-24	85.7	UBA/TS-N domain
`XP_057809582.1`	Pfam	`PF09280`	XPC-binding	Domain	258	313	2.7e-23	82.1	XPC-binding domain
`XP_057809582.1`	Pfam	`PF00627`	UBA	Domain	338	373	1.9e-24	85.7	UBA/TS-N domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953599.1
GACAGACTTTAAAACTACCGTTTCTACTCCGATTTGTGTCTCTCATATTTATCTCTCCTCCTTTCCCCTCTCTCTATAATTGGACGCATACACGTCTTCGGCGGCTACCGGAGATCGGAGACGCCGTCCCACAGGGAGCCCACGACGTCGCAAAAAGATAAATACGACCTCAGATGAAGATTTTCGTGAAGACTCTGAAGGGCTCGCACTTCCCCGTCGAAGTGAAACCCGAGGACACTGTGGCAGATGTGAAGAAATGT...

CDS

1 records

下载 CDS FASTA

LOC131023937
ATGAAGATTTTCGTGAAGACTCTGAAGGGCTCGCACTTCCCCGTCGAAGTGAAACCCGAGGACACTGTGGCAGATGTGAAGAAATGTATTGAAGAAGTCCAGGGCTCTGGTGTCTACCCTGCTGCTCAGCAGATGCTTATTTATCAAGGAAAAGTTCTGAAGGATGAGACAACTCTTGAGGAGAACAAAGTTGCAGAAAATAGTTATGTCGTGATTATGCTGACCAAGACCAAGGCTTCATCAAGTGGAGGAACTGCATC...

Protein

1 records

下载 Protein FASTA

XP_057809582.1
MKIFVKTLKGSHFPVEVKPEDTVADVKKCIEEVQGSGVYPAAQQMLIYQGKVLKDETTLEENKVAENSYVVIMLTKTKASSSGGTASAPPSNAPQPASNTSQPTLPVTAAPSPAPTVAPVQSAPESSPVPVPSPAPAPSADVYGLAASNLVAGSNLESTVQEIIDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPEQAEIPPVAQPPAGGQPVNPSSQATPPAVPPSGPNANPLDLFPQGLPNMGSNAAGAGTLDF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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