Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002160`

染色体: Chr01 坐标: 37604413-37606391 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002160`
名称	SmilChr01G002160
描述	uncharacterized SmilChr01G002160
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	37604413 - 37606391 / `+`

ID 对照

NCBI Gene ID	`LOC131023941`
GeneID	`131023941`
locus_tag	`-`
NCBI Name	`LOC131023941`
原始查询	`LOC131023941`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838783]; symbol=AT1G21790; hit=AT1G21790; species=arabidopsis; confidence=high
产物	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838783]; symbol=AT1G21790; hit=AT1G21790; species=arabidopsis; confidence=high
Arabidopsis	`AT1G21790` (AT1G21790) TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838783] identity=65.2; qcov=1.02; evalue=1.79e-133; confidence=high
Rice	`Os01g0869600` - identity=63.5; qcov=0.933; evalue=4.53e-105; confidence=high
GO	GO:0005886 (plasma membrane); GO:0007009 (plasma membrane organization); GO:0055091 (phospholipid homeostasis); GO:0071709 (membrane assembly); GO:0097035 (regulation of membrane lipid distribution)
KEGG	-
Pfam	PF03798 (TRAM_LAG1_CLN8)
InterPro	-
eggNOG	-
NR	GeneID:131023941

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057809589.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057809589.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057809589.1`
4	Nucleus	细胞核	0.00000	`XP_057809589.1`
5	Chromosome	染色体	0.00000	`XP_057809589.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:37604864`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr1:37606076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809589.1

292 aa

146

292

TRAM_LAG1_CLN8

PF03798 TRAM_LAG1_CLN8 78-270 aa

XP_057809597.1

285 aa

142

285

TRAM_LAG1_CLN8

PF03798 TRAM_LAG1_CLN8 78-263 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809589.1`	Pfam	`PF03798`	TRAM_LAG1_CLN8	Domain	78	270	9.4e-22	78.6	TLC domain
`XP_057809597.1`	Pfam	`PF03798`	TRAM_LAG1_CLN8	Domain	78	263	1.5e-19	71.5	TLC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953606.1
GAAAAAGTAGGAAGAGCCGAAGAGGGGGAAAAAGAAGAATTAGCAGTAGAAGAGAAAAACGTTACTTAGTCAATGTGGTAATGGCAAAAGCAAAAACGCTACTTGCGTCTTTTTCTTTTGGTCCATAGCCGCATTTAGCGCCTCGCTTTTTGCCTTTTTGTCTGATTCTGTGAGAGCTGTGTGTGTACCATTCTGCTCCTCCACCGCCGGCAAAAATTACCGAACGAAATATGCCGAGGGATGGCGGCGGCAGCGGTCGC...

XM_057953614.1
TTAGCAGTAGAAGAGAAAAACGTTACTTAGTCAATGTGGTAATGGCAAAAGCAAAAACGCTACTTGCGTCTTTTTCTTTTGGTCCATAGCCGCATTTAGCGCCTCGCTTTTTGCCTTTTTGTCTGATTCTGTGAGAGCTGTGTGTGTACCATTCTGCTCCTCCACCGCCGGCAAAAATTACCGAACGAAATATGCCGAGGGATGGCGGCGGCAGCGGTCGCGGCCGCGGAGGTGCGAGCAGAGTTCAGAAGGAGAGCGAA...

CDS

2 records

下载 CDS FASTA

LOC131023941
ATGCCGAGGGATGGCGGCGGCAGCGGTCGCGGCCGCGGAGGTGCGAGCAGAGTTCAGAAGGAGAGCGAAGCTGGAGCGTTTTTCATGGCTACTCTAGTGATGTGGAGCGTCTCAGTTTTCTTCGAAATCCTCTTCAACAAGCGCTCCGAGCTACTTCCGATCATCATCGGCTTCGCCTTCTTCCAGTTGGCGAACGCCGTCATTCGGAAGTTCGTCTCACGCGACCCGATCTTCGTCAACACGTGCGTTTCCCTCATCCA...

Protein

2 records

下载 Protein FASTA

XP_057809589.1
MPRDGGGSGRGRGGASRVQKESEAGAFFMATLVMWSVSVFFEILFNKRSELLPIIIGFAFFQLANAVIRKFVSRDPIFVNTCVSLIHSFITSASVVLILLNQSMEIGVDKMFEHSQLVEVTWQWAYQALCFSCGYFAYDQLDMLLYRLYSGWIPSILVHHLVLLVCFTLALYRKITINYLILTLVCELHSIFLHVRKIRRMAGIRDAGSKIVKAEWVLNWLTFVFARCMSHILITVKLVIDASKFDKGVELPLALSGMAG...

XP_057809597.1
MPRDGGGSGRGRGGASRVQKESEAGAFFMATLVMWSVSVFFEILFNKRSELLPIIIGFAFFQLANAVIRKFVSRDPIFVNTVFMCLAVVLILLNQSMEIGVDKMFEHSQLVEVTWQWAYQALCFSCGYFAYDQLDMLLYRLYSGWIPSILVHHLVLLVCFTLALYRKITINYLILTLVCELHSIFLHVRKIRRMAGIRDAGSKIVKAEWVLNWLTFVFARCMSHILITVKLVIDASKFDKGVELPLALSGMAGMNMLNVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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