当前解析结果
SmilChr04G003152| 统一新 Gene ID | SmilChr04G003152 |
|---|---|
| 名称 | SmilChr04G003152 |
| 描述 | uncharacterized SmilChr04G003152 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 48126003 - 48134453 / + |
| NCBI Gene ID | LOC131023947 |
|---|---|
| GeneID | 131023947 |
| locus_tag | - |
| NCBI Name | LOC131023947 |
| 原始查询 | LOC131023947 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833818]; symbol=AT5G38360; hit=AT5G38360; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833818]; symbol=AT5G38360; hit=AT5G38360; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G38360 (AT5G38360)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:833818] identity=70.2; qcov=0.972; evalue=1.64e-143; confidence=high |
| Rice | Os04g0381400- identity=78.8; qcov=0.184; evalue=9.28e-23; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023947 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.40000 | XP_057809594.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057809594.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057809594.1 |
| 4 | Lipid droplet | 脂滴 | 0.20000 | XP_057809594.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057809594.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:48126061 |
C |
CA |
1bp_insertion | frameshift_variant | 2 | B50,B6 |
Chr4:48126061 |
C |
CA |
1bp_insertion | CDS_variant | 2 | B50,B6 |
Chr4:48127013 |
C |
T |
EMS_canonical_SNV | stop_gained | 102 | A1,A10,A13,A18,A19,A20,A22,A23,A4,A8,A9,B10,B101,B102,B104,B107,B108,B110,B111,B113,B114,B118,B119,B120,B122,B129,B135,B15,B18,B19,B21,B23,B26,B27,B28,B3,B31,B32,B35,B39,B4,B40,B44,B48,B52,B53,B54,B55,B56,B60,B61,B62,B64,B77,B78,B79,B8,B81,B84,B90,B92,B99,C11,C16,C2,C22,C23,C24,C27,C28,C34,C35,C38,C40,C44,C45,C48,C49,C50,C52,C53,C54,C55,C57,C58,C60,C63,C69,C7,C71,C72,C77,C78,C79,C80,C84,C9,D10,D3,D4,D7,D8 |
Chr4:48127772 |
TAG |
T |
2bp_deletion | frameshift_variant | 2 | B140,C1 |
Chr4:48127772 |
TAG |
T |
2bp_deletion | CDS_variant | 2 | B140,C1 |
Chr4:48127809 |
ATT |
A |
2bp_deletion | frameshift_variant | 17 | B102,B115,B138,B139,B18,B24,B4,B61,B62,B64,C40,C41,C43,C51,C67,C71,C77 |
Chr4:48134031 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B13,B140,C21 |
Chr4:48134052 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B50,B6 |
Chr4:48134094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809594.1PF00561
Abhydrolase_1 16-108 aa
PF12146
Hydrolase_4 18-260 aa
PF12697
Abhydrolase_6 18-261 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809594.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 16 | 108 | 5.5e-16 | 59.7 | alpha/beta hydrolase fold |
XP_057809594.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 18 | 260 | 2.8e-10 | 40.6 | Serine aminopeptidase, S33 |
XP_057809594.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 18 | 261 | 2.9e-22 | 81.1 | Alpha/beta hydrolase family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。