Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002248

染色体: Chr05 坐标: 24146647-24148771 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002248
名称SmilChr05G002248
描述UDP-glycosyltransferase 87A1-like
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向24146647 - 24148771 / -

ID 对照

NCBI Gene IDLOC131024157
GeneID131024157
locus_tag-
NCBI NameLOC131024157
原始查询LOC131024157

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述UDP-glycosyltransferase 87A1-like
产物UDP-glycosyltransferase 87A1-like
ArabidopsisAT2G30150 (AT2G30150)
UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817567]
identity=54; qcov=0.989; evalue=3.89e-163; confidence=high
RiceOs01g0805400 (OsEnS-18)
-
identity=42.3; qcov=1.06; evalue=5.78e-110; confidence=medium
GOGO:0008194 (UDP-glycosyltransferase activity)
KEGG-
PfamPF00201 (UDPGT)
InterPro-
eggNOG-
NRGeneID:131024157

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057809641.1
2 Cytoplasm 细胞质 0.60000 XP_057809641.1
3 Nucleus 细胞核 0.00000 XP_057809641.1
4 Chromosome 染色体 0.00000 XP_057809641.1
5 Centromere 着丝粒 0.00000 XP_057809641.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:24146779 C CTG 2bp_insertion frameshift_variant 3 A15,A5,B20
Chr5:24146779 C CTG 2bp_insertion CDS_variant 3 A15,A5,B20
Chr5:24146780 C T EMS_canonical_SNV CDS_variant 4 A15,A5,B20,C10
Chr5:24146788 C T EMS_canonical_SNV CDS_variant 3 B1,B2,C65
Chr5:24146796 C T EMS_canonical_SNV CDS_variant 2 B122,C9
Chr5:24146808 C T EMS_canonical_SNV CDS_variant 1 B13
Chr5:24146853 C T EMS_canonical_SNV CDS_variant 2 B108,C82
Chr5:24146953 AC A 1bp_deletion frameshift_variant 1 A15
Chr5:24146953 AC A 1bp_deletion CDS_variant 1 A15
Chr5:24146956 AC A 1bp_deletion frameshift_variant 1 C60
Chr5:24146956 AC A 1bp_deletion CDS_variant 1 C60
Chr5:24147086 G A EMS_canonical_SNV CDS_variant 2 B122,C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057809641.1
451 aa
N
1
226
451
UDPGT
C
PF00201 UDPGT 262-380 aa
XP_057809642.1
448 aa
N
1
224
448
UDPGT
C
PF00201 UDPGT 259-377 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057809641.1 Pfam PF00201 UDPGT Family 262 380 1.8e-17 64.0 UDP-glucoronosyl and UDP-glucosyl transferase
XP_057809642.1 Pfam PF00201 UDPGT Family 259 377 1.8e-17 64.1 UDP-glucoronosyl and UDP-glucosyl transferase

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057953659.1
TACCGATTTTTGGACAATACCCCACCACTTATAATTACTCTTACTTTCACTTTTTCACATTTTCCAATATTAATTATAACACATTTTCATCACTCTCAATACATTCAACAACTTTTTCTTCACTATCAATACACCTAACAATATTTTTCTTAAAACGCGTGTCACTCCCTCCTAAAAAGTTTTTTTTGTGGACCGAGGGAGTATCATAATCCTACGCAGCTCGTCTCCCTCGACCAACAGCTGTGACTGAGCATCTCCGC...
XM_057953658.1
TACCGATTTTTGGACAATACCCCACCACTTATAATTACTCTTACTTTCACTTTTTCACATTTTCCAATATTAATTATAACACATTTTCATCACTCTCAATACATTCAACAACTTTTTCTTCACTATCAATACACCTAACAATATTTTTCTTAAAACGCGTGTCACTCCCTCCTAAAAAGTTTTTTTTGTGGACCGAGGGAGTATCATAATCCTACGCAGCTCGTCTCCCTCGACCAACAGCTGTGACTGAGCATCTCCGC...

CDS

2 records

下载 CDS FASTA
LOC131024157
ATGGCCGGAGGGAATTGCGGCTGCCACATCGTAGCGTTGCCGTACCCCGGCAGAGGCCACATCAATCCTATGCTCAACCTCTGCCGCGTCATACTCGACTCCCGCCCCGAAATCAGCGTTTCCTTCATCGTCACAGAGGAGTGGCTCGGCCTCCTCGCCGCCACGCCGCCAACCCCTAACTTCAGATTCCACACAGTACCTAACGTCATTCCCTCCGAGATAGGCCGAGGCAACGACTTCCCCGGCTTCATGGACGCCGT...
LOC131024157
ATGGCCGGAGGGAATTGCGGCTGCCACATCGTAGCGTTGCCGTACCCCGGCAGAGGCCACATCAATCCTATGCTCAACCTCTGCCGCGTCATACTCGACTCCCGCCCCGAAATCAGCGTTTCCTTCATCGTCACAGAGGAGTGGCTCGGCCTCCTCGCCGCCACGCCGCCAACCCCTAACTTCAGATTCCACACAGTACCTAACGTCATTCCCTCCGAGATAGGCCGAGGCAACGACTTCCCCGGCTTCATGGACGCCGT...

Protein

2 records

下载 Protein FASTA
XP_057809641.1
MAGGNCGCHIVALPYPGRGHINPMLNLCRVILDSRPEISVSFIVTEEWLGLLAATPPTPNFRFHTVPNVIPSEIGRGNDFPGFMDAVLTRLEAPVEQLLDRLPPPKPTLIIYDTYLTWAVAVGGRRNIPVASFYTMSATVFSIFYHSHLIFQHRHSPSNIADDEEGEENLVDYIPGVPPIRVTDLPTPIHGKGNEVFPQALQAIQSAPKAQYLLFTSLYELESQVIDALRQKIPTKIYTLGLAIPTLSSTTDERPYYLKW...
XP_057809642.1
MAGGNCGCHIVALPYPGRGHINPMLNLCRVILDSRPEISVSFIVTEEWLGLLAATPPTPNFRFHTVPNVIPSEIGRGNDFPGFMDAVLTRLEAPVEQLLDRLPPPKPTLIIYDTYLTWAVAVGGRRNIPVASFYTMSATVFSIFYHSHLIFQHRHSPSNIAEGEENLVDYIPGVPPIRVTDLPTPIHGKGNEVFPQALQAIQSAPKAQYLLFTSLYELESQVIDALRQKIPTKIYTLGLAIPTLSSTTDERPYYLKWLDA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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