Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002251`

染色体: Chr05 坐标: 24175862-24183192 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002251`
名称	SmilChr05G002251
描述	26S proteasome non-ATPase regulatory subunit 1 homolog A-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	24175862 - 24183192 / `-`

ID 对照

NCBI Gene ID	`LOC131024161`
GeneID	`131024161`
locus_tag	`-`
NCBI Name	`LOC131024161`
原始查询	`LOC131024161`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	26S proteasome non-ATPase regulatory subunit 1 homolog A-like
产物	26S proteasome non-ATPase regulatory subunit 1 homolog A-like
Arabidopsis	`AT2G32730` (AT2G32730) 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit [Source:NCBI gene (formerly Entrezgene);Acc:817833] identity=81.6; qcov=1.02; evalue=0; confidence=high
Rice	`Os08g0224700` (OsRpn2a) - identity=75.1; qcov=0.99; evalue=0; confidence=high
GO	GO:0000502 (proteasome complex); GO:0005634 (nucleus); GO:0008540 (proteasome regulatory particle, base subcomplex); GO:0030234 (enzyme regulator activity); GO:0034515 (proteasome storage granule); GO:0042176 (regulation of protein catabolic process); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF01851 (PC_rep); PF13646 (HEAT_2); PF18004 (RPN2_C); PF21505 (RPN2_N)
InterPro	-
eggNOG	-
NR	GeneID:131024161

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057809646.1`
2	Nucleus	细胞核	0.80000	`XP_057809646.1`
3	Chromosome	染色体	0.00000	`XP_057809646.1`
4	Centromere	着丝粒	0.00000	`XP_057809646.1`
5	Chromatin	染色质	0.00000	`XP_057809646.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:24176414`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B126
`Chr5:24176442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B109,B113,C45,C7
`Chr5:24177154`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr5:24177185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr5:24177417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C47,D11,D4
`Chr5:24177473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B131,B93,C43
`Chr5:24178526`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,C82
`Chr5:24179228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C85
`Chr5:24182840`	`GAC`	`G`	2bp_deletion	frameshift_variant	1	B51
`Chr5:24182840`	`GAC`	`G`	2bp_deletion	CDS_variant	1	B51
`Chr5:24182974`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B109,B113,C45,C7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809646.1

994 aa

497

994

RPN2_N

PC_rep

HEAT_2

PC_rep

RPN2_C

PF21505 RPN2_N 11-361 aa PF01851 PC_rep 494-527 aa PF13646 HEAT_2 617-709 aa PF01851 PC_rep 668-701 aa PF18004 RPN2_C 803-950 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809646.1`	Pfam	`PF21505`	RPN2_N	Repeat	11	361	1.4e-87	294.6	26S proteasome subunit RPN2, N-terminal domain
`XP_057809646.1`	Pfam	`PF01851`	PC_rep	Repeat	494	527	1.2e-29	101.9	Proteasome/cyclosome repeat
`XP_057809646.1`	Pfam	`PF13646`	HEAT_2	Repeat	617	709	1e-17	64.9	HEAT repeats
`XP_057809646.1`	Pfam	`PF01851`	PC_rep	Repeat	668	701	1.2e-29	101.9	Proteasome/cyclosome repeat
`XP_057809646.1`	Pfam	`PF18004`	RPN2_C	Domain	803	950	5e-45	154.0	26S proteasome regulatory subunit RPN2 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953663.1
GAACTTTGCCCTTCTTCCAAGAAACCCCAATAAACAAGCAAACAAAGGAAACTTGAAAAACAAATCAATAGTTTTTCCTGTTTGCAGACAGAATTCTCGTAATCTTCTCCAATCTTCCTATCATCTTGGCACCCTCAGTGTAAACCCTAAACCCAAACCTCATTAGATCGAAGCCCTAAATTTCTGGGTTCTATCTAGTATCTACAATGGCTGCAGCGGCGGCGACGATGGTGAGTTCGGCGGGGGGACTTCTGGCTATG...

CDS

1 records

下载 CDS FASTA

LOC131024161
ATGGCTGCAGCGGCGGCGACGATGGTGAGTTCGGCGGGGGGACTTCTGGCTATGCTGAATGAGAGTCACCCGGCGCTGAAGTTGCATGCTCTCTCCAATCTCAACGCCTTTGTAGACTACTTCTGGCCCGAGATCTCCACTTCTGTCCCTATTATAGAAAGTTTGTATGAAGATGAAGAGTTTGACCAGAGGCAGCTAGCTGCCTTGTTGGTTTCAAAGGTTTTCTATTATTTGGGTGAGCTCAATGATTCATTGTCCTA...

Protein

1 records

下载 Protein FASTA

XP_057809646.1
MAAAAATMVSSAGGLLAMLNESHPALKLHALSNLNAFVDYFWPEISTSVPIIESLYEDEEFDQRQLAALLVSKVFYYLGELNDSLSYALGAGPLFDVSEDSDYVHTLLAKAIDKYANLKTKAAEANDESALIDPRLEAIVVRMLDKCTADGKYQQAIGMAIECRRFDKLEEAVIRSDNVHLTINYCIDVCHSFVNRREYRREVLRLLVKIYQQLPSPDYLSMCQRLMFLDEPEGVASILEELLRSENVDDALLAFQIAFD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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