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Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002285

染色体: Chr05 坐标: 24595185-24601957 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002285
名称SmilChr05G002285
描述uncharacterized SmilChr05G002285
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向24595185 - 24601957 / -

ID 对照

NCBI Gene IDLOC131024192
GeneID131024192
locus_tag-
NCBI NameLOC131024192
原始查询LOC131024192

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Cyclopropane-fatty-acyl-phospholipid synthase [Source:NCBI gene (formerly Entrezgene);Acc:821932]; symbol=AT3G23530; hit=AT3G23530; species=arabidopsis; confidence=high
产物Cyclopropane-fatty-acyl-phospholipid synthase [Source:NCBI gene (formerly Entrezgene);Acc:821932]; symbol=AT3G23530; hit=AT3G23530; species=arabidopsis; confidence=high
ArabidopsisAT3G23530 (AT3G23530)
Cyclopropane-fatty-acyl-phospholipid synthase [Source:NCBI gene (formerly Entrezgene);Acc:821932]
identity=58.5; qcov=0.96; evalue=0; confidence=high
RiceOs12g0267200
-
identity=51.8; qcov=0.963; evalue=0; confidence=high
GOGO:0008168 (methyltransferase activity)
KEGG-
PfamPF02353 (CMAS); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro-
eggNOG-
NRGeneID:131024192

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057809683.1
2 Endoplasmic reticulum membrane 内质网膜 0.60000 XP_057809685.1
3 Nucleus 细胞核 0.00000 XP_057809683.1
4 Chromosome 染色体 0.00000 XP_057809683.1
5 Centromere 着丝粒 0.00000 XP_057809683.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:24595312 G GA 1bp_insertion frameshift_variant 20 A18,A22,A4,B102,B107,B117,B120,B124,B129,B131,B29,B55,B6,B69,B73,B85,C27,C31,C43,C49
Chr5:24595369 C T EMS_canonical_SNV CDS_variant 1 C30
Chr5:24595601 G A EMS_canonical_SNV CDS_variant 3 B140,B82,C15
Chr5:24595644 TA T 1bp_deletion frameshift_variant 2 B18,C67
Chr5:24595644 TA T 1bp_deletion CDS_variant 2 B18,C67
Chr5:24596002 TC T 1bp_deletion frameshift_variant 9 B1,B10,B130,B134,B16,B42,B87,C67,D5
Chr5:24596016 ATT A 2bp_deletion frameshift_variant 2 B1,B87
Chr5:24596016 ATT A 2bp_deletion CDS_variant 2 B1,B87
Chr5:24596214 TGC T 2bp_deletion frameshift_variant 17 A6,B104,B106,B120,B122,B128,B131,B55,B6,B73,B85,B91,B95,C33,C50,C55,D8
Chr5:24596331 CAT C 2bp_deletion frameshift_variant 25 A6,A7,B104,B120,B123,B128,B131,B134,B14,B140,B2,B38,B45,B55,B6,B73,B75,B85,B91,B95,C30,C37,C50,C69,C76
Chr5:24596334 G GGT 2bp_insertion frameshift_variant 5 B123,B134,B2,B73,B85
Chr5:24596334 G GGT 2bp_insertion CDS_variant 5 B123,B134,B2,B73,B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809683.1
803 aa
N
1
402
803
CMAS
Methyltransf_23
Methyltransf_31
Methyltransf_25
Methyltransf_12
Methyltransf_11
C
PF02353 CMAS 507-771 aa PF13489 Methyltransf_23 555-684 aa PF13847 Methyltransf_31 565-677 aa PF13649 Methyltransf_25 570-666 aa PF08242 Methyltransf_12 571-668 aa PF08241 Methyltransf_11 571-670 aa
XP_057809684.1
801 aa
N
1
400
801
CMAS
Methyltransf_23
Methyltransf_31
Methyltransf_25
Methyltransf_12
Methyltransf_11
C
PF02353 CMAS 505-769 aa PF13489 Methyltransf_23 553-682 aa PF13847 Methyltransf_31 563-675 aa PF13649 Methyltransf_25 568-664 aa PF08242 Methyltransf_12 569-666 aa PF08241 Methyltransf_11 569-668 aa
XP_057809685.1
778 aa
N
1
389
778
CMAS
Methyltransf_23
Methyltransf_31
Methyltransf_25
Methyltransf_12
Methyltransf_11
C
PF02353 CMAS 507-743 aa PF13489 Methyltransf_23 555-685 aa PF13847 Methyltransf_31 565-677 aa PF13649 Methyltransf_25 570-666 aa PF08242 Methyltransf_12 571-668 aa PF08241 Methyltransf_11 571-670 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057809683.1 Pfam PF02353 CMAS Family 507 771 1e-74 252.0 Mycolic acid cyclopropane synthetase
XP_057809683.1 Pfam PF13489 Methyltransf_23 Domain 555 684 5.2e-07 30.2 Methyltransferase domain
XP_057809683.1 Pfam PF13847 Methyltransf_31 Domain 565 677 4.1e-07 30.6 Methyltransferase domain
XP_057809683.1 Pfam PF13649 Methyltransf_25 Domain 570 666 2.1e-12 48.3 Methyltransferase domain
XP_057809683.1 Pfam PF08242 Methyltransf_12 Domain 571 668 1.9e-09 38.8 Methyltransferase domain
XP_057809683.1 Pfam PF08241 Methyltransf_11 Domain 571 670 2.7e-10 41.5 Methyltransferase domain
XP_057809684.1 Pfam PF02353 CMAS Family 505 769 1e-74 252.0 Mycolic acid cyclopropane synthetase
XP_057809684.1 Pfam PF13489 Methyltransf_23 Domain 553 682 5.2e-07 30.2 Methyltransferase domain
XP_057809684.1 Pfam PF13847 Methyltransf_31 Domain 563 675 3.5e-07 30.8 Methyltransferase domain
XP_057809684.1 Pfam PF13649 Methyltransf_25 Domain 568 664 2e-12 48.3 Methyltransferase domain
XP_057809684.1 Pfam PF08242 Methyltransf_12 Domain 569 666 1.9e-09 38.9 Methyltransferase domain
XP_057809684.1 Pfam PF08241 Methyltransf_11 Domain 569 668 2.7e-10 41.5 Methyltransferase domain
XP_057809685.1 Pfam PF02353 CMAS Family 507 743 6.1e-69 233.1 Mycolic acid cyclopropane synthetase
XP_057809685.1 Pfam PF13489 Methyltransf_23 Domain 555 685 4.9e-07 30.3 Methyltransferase domain
XP_057809685.1 Pfam PF13847 Methyltransf_31 Domain 565 677 3.9e-07 30.7 Methyltransferase domain
XP_057809685.1 Pfam PF13649 Methyltransf_25 Domain 570 666 1.9e-12 48.4 Methyltransferase domain
XP_057809685.1 Pfam PF08242 Methyltransf_12 Domain 571 668 1.6e-09 39.0 Methyltransferase domain
XP_057809685.1 Pfam PF08241 Methyltransf_11 Domain 571 670 2.3e-10 41.7 Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057953702.1
TAAGAAGGCGGGATTAGATATTCTCACTCTTCTTGAATGGAGAACACTATGATAAACAGCATTTTTCTTTTTCTTTTTTGCGGCAAATTATATATGTGCCTGAATAAAAAATGGAGAAATGAATTTGATATAGTAGAACTGAGGACGCAGCGTTGGTAGAAAGCACCAATTCTCGAGAGCTAGCATTAGATATTTAATGATGGTGCTTCCTCAGCGCATCACATGTTCGATGAAATGCCTCACCATTCATTTTCCCTAAA...
XM_057953700.1
AGAAGGCGGGATTAGATATTCTCACTCTTCTTGAATGGAGAACACTATGATAAACAGCATTTTTCTTTTTCTTTTTTGCGGCAAATTATATATGTGCCTGAATAAAAAATGGAGAAATGAATTTGATATAGTAGAACTGAGGACGCAGCGTTGGTAGAAAGCACCAATTCTCGAGAGCTAGCATTAGATATTTAATGATGGTGCTTCCTCAGCGCATCACATGTTCGATGAAATGCCTCACCATTCATTTTCCCTAAATC...

CDS

3 records

下载 CDS FASTA
LOC131024192
ATGTATCCAGAGGTGATGGAACTATTTGAGAGTGTTGGAGTTGATACTGAGGTCTCTGACATTTCATACTCTGTGAGCTTGGATCAAGGCCAAGGTTATGAATGGGGCACTCGAAATGGACTCTCAAGTTTGTTTGCACAAAAGAAGAATGCCCTGAATCCATGGTTTTGGAAAATGATTAGGGAAATCATTAAGTTCAGAGACGACGCCTCTCTTTATGTTGAAGAGCTCGATAACAATCCAGATATTGACCGGAATGA...
LOC131024192
ATGTATCCAGAGGTGATGGAACTATTTGAGAGTGTTGGAGTTGATACTGAGGTCTCTGACATTTCATACTCTGTGAGCTTGGATCAAGGCCAAGGTTATGAATGGGGCACTCGAAATGGACTCTCAAGTTTGTTTGCACAAAAGAAGAATGCCCTGAATCCATGGTTTTGGAAAATGATTAGGGAAATCATTAAGTTCAGAGACGACGCCTCTCTTTATGTTGAAGAGCTCGATAACAATCCAGATATTGACCGGAATGA...

Protein

3 records

下载 Protein FASTA
XP_057809683.1
MYPEVMELFESVGVDTEVSDISYSVSLDQGQGYEWGTRNGLSSLFAQKKNALNPWFWKMIREIIKFRDDASLYVEELDNNPDIDRNETLGTFVQSRGYSELFQKAFLIPICASIWSCSSAVMTFSAYLTLSILRNHDILELLGLTKRFTPKWLSQSYVNGIKKELESRGCQVKTDSEICSVFTNDMGSGCTITCKDGLEEAYDKCIIAAHAPDALKILGTQATYDELRILGAFQYSYSDIFLHHDDNQMPKIRGAWGSRN...
XP_057809684.1
MYPEVMELFESVGVDTEVSDISYSVSLDQGQGYEWGTRNGLSSLFAQKKNALNPWFWKMIREIIKFRDDASLYVEELDNNPDIDRNETLGTFVQSRGYSELFQKAFLIPICASIWSCSSAVMTFSAYLTLSILRNHDILELLGLTKRFTPKWLSQSYVNGIKKELESRGCQVKTDSEICSVFTNDMGCTITCKDGLEEAYDKCIIAAHAPDALKILGTQATYDELRILGAFQYSYSDIFLHHDDNQMPKIRGAWGSRNFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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