当前解析结果
SmilChr05G002324| 统一新 Gene ID | SmilChr05G002324 |
|---|---|
| 名称 | SmilChr05G002324 |
| 描述 | aldehyde dehydrogenase 22A1-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 25066029 - 25074300 / + |
| NCBI Gene ID | LOC131024228 |
|---|---|
| GeneID | 131024228 |
| locus_tag | - |
| NCBI Name | LOC131024228 |
| 原始查询 | LOC131024228 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aldehyde dehydrogenase 22A1-like |
| 产物 | aldehyde dehydrogenase 22A1-like |
| Arabidopsis | AT3G66658 (ALDH22A1)aldehyde dehydrogenase 22A1 [Source:NCBI gene (formerly Entrezgene);Acc:819849] identity=81.8; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0688800 (OsALDH22)- identity=82.6; qcov=1; evalue=0; confidence=high |
| GO | GO:0004029 (aldehyde dehydrogenase (NAD+) activity) |
| KEGG | - |
| Pfam | PF00171 (Aldedh) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024228 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057809721.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057809721.1 |
| 3 | Vesicle | 囊泡 | 0.20000 | XP_057809721.1 |
| 4 | Lipid droplet | 脂滴 | 0.20000 | XP_057809721.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057809721.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:25068264 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B82 |
Chr5:25068271 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,B82,C28,C78 |
Chr5:25068316 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr5:25069407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C80,D5 |
Chr5:25069419 |
G |
GT |
1bp_insertion | frameshift_variant | 7 | B109,B42,B52,B53,B87,C28,C41 |
Chr5:25069424 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | C80,D5 |
Chr5:25069424 |
TA |
T |
1bp_deletion | CDS_variant | 2 | C80,D5 |
Chr5:25069450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr5:25069600 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B78 |
Chr5:25069600 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B78 |
Chr5:25070042 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B77,C33,C78 |
Chr5:25070678 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,C3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057809721.1PF00171
Aldedh 58-523 aa
XP_057809722.1PF00171
Aldedh 58-523 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809721.1 |
Pfam | PF00171 |
Aldedh | Family | 58 | 523 | 3.1e-122 | 409.2 | Aldehyde dehydrogenase family |
XP_057809722.1 |
Pfam | PF00171 |
Aldedh | Family | 58 | 523 | 3.1e-122 | 409.2 | Aldehyde dehydrogenase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。