当前解析结果
SmilChr05G002356| 统一新 Gene ID | SmilChr05G002356 |
|---|---|
| 名称 | SmilChr05G002356 |
| 描述 | calcium-binding protein CP1 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 25577790 - 25578711 / + |
| NCBI Gene ID | LOC131024253 |
|---|---|
| GeneID | 131024253 |
| locus_tag | - |
| NCBI Name | LOC131024253 |
| 原始查询 | LOC131024253 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calcium-binding protein CP1 |
| 产物 | calcium-binding protein CP1 |
| Arabidopsis | AT5G49480 (CP1)Ca2+-binding protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:835008] identity=47.5; qcov=1.02; evalue=1.61e-44; confidence=medium |
| Rice | Os03g0310800- identity=48.2; qcov=0.911; evalue=1.51e-32; confidence=medium |
| GO | GO:0005509 (calcium ion binding) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024253 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057809757.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057809757.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057809757.1 |
| 4 | Mitochondrion | 线粒体 | 0.20000 | XP_057809757.1 |
| 5 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057809757.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:25578013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C18,C29 |
Chr5:25578018 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B53,B66,C14,C20,D2 |
Chr5:25578251 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B70 |
Chr5:25578251 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B70 |
Chr5:25578253 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B70 |
Chr5:25578253 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B70 |
Chr5:25578347 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,C48 |
Chr5:25578376 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B44,B52,C29 |
Chr5:25578395 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr5:25578409 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809757.1PF13499
EF-hand_7 15-75 aa
PF13202
EF-hand_5 17-40 aa
PF13405
EF-hand_6 17-40 aa
PF13833
EF-hand_8 30-72 aa
PF13202
EF-hand_5 56-76 aa
PF13405
EF-hand_6 95-120 aa
PF13202
EF-hand_5 96-116 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809757.1 |
Pfam | PF13499 |
EF-hand_7 | Domain | 15 | 75 | 7.3e-20 | 71.8 | EF-hand domain pair |
XP_057809757.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 17 | 40 | 8e-19 | 66.9 | EF hand |
XP_057809757.1 |
Pfam | PF13405 |
EF-hand_6 | Domain | 17 | 40 | 5.6e-18 | 63.6 | EF-hand domain |
XP_057809757.1 |
Pfam | PF13833 |
EF-hand_8 | Domain | 30 | 72 | 1.3e-08 | 35.2 | EF-hand domain pair |
XP_057809757.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 56 | 76 | 8e-19 | 66.9 | EF hand |
XP_057809757.1 |
Pfam | PF13405 |
EF-hand_6 | Domain | 95 | 120 | 5.6e-18 | 63.6 | EF-hand domain |
XP_057809757.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 96 | 116 | 8e-19 | 66.9 | EF hand |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。