Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002386`

染色体: Chr05 坐标: 26307422-26315680 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002386`
名称	SmilChr05G002386
描述	uncharacterized SmilChr05G002386
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	26307422 - 26315680 / `-`

ID 对照

NCBI Gene ID	`LOC131024278`
GeneID	`131024278`
locus_tag	`-`
NCBI Name	`LOC131024278`
原始查询	`LOC131024278`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:NCBI gene (formerly Entrezgene);Acc:838387]; symbol=AT1G18070; hit=AT1G18070; species=arabidopsis; confidence=high
产物	Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:NCBI gene (formerly Entrezgene);Acc:838387]; symbol=AT1G18070; hit=AT1G18070; species=arabidopsis; confidence=high
Arabidopsis	`AT1G18070` (AT1G18070) Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:NCBI gene (formerly Entrezgene);Acc:838387] identity=79; qcov=0.948; evalue=0; confidence=high
Rice	`Os04g0270100` - identity=81.8; qcov=0.844; evalue=0; confidence=high
GO	GO:0000288 (nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay); GO:0003747 (translation release factor activity); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0006412 (translation); GO:0006415 (translational termination); GO:0018444 (translation release factor complex)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage))
Pfam	PF00009 (GTP_EFTU); PF03143 (GTP_EFTU_D3); PF03144 (GTP_EFTU_D2); PF22594 (GTP-eEF1A_C)
InterPro	-
eggNOG	-
NR	GeneID:131024278

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057809776.1`
2	Cytosol	细胞质基质	1.00000	`XP_057809776.1`
3	Nucleus	细胞核	0.60000	`XP_057809780.1`
4	Nucleoplasm	核质	0.20000	`XP_057809777.1`
5	Chromosome	染色体	0.00000	`XP_057809776.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:26308868`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr5:26309105`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr5:26310580`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B18,B8,C39
`Chr5:26310618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr5:26310658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr5:26310841`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B50,C7
`Chr5:26311012`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B48,B98,C61,C80
`Chr5:26311049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B72,C30,D6
`Chr5:26311347`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B106,B2,C35
`Chr5:26311467`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr5:26312813`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr5:26313763`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809776.1

528 aa

264

528

GTP_EFTU

GTP_EFTU_D2

GTP_EFTU_D3

GTP-eEF1A_C

PF00009 GTP_EFTU 96-309 aa PF03144 GTP_EFTU_D2 340-406 aa PF03143 GTP_EFTU_D3 413-521 aa PF22594 GTP-eEF1A_C 419-520 aa

XP_057809777.1

527 aa

264

527

GTP_EFTU

GTP_EFTU_D2

GTP_EFTU_D3

GTP-eEF1A_C

PF00009 GTP_EFTU 95-308 aa PF03144 GTP_EFTU_D2 339-405 aa PF03143 GTP_EFTU_D3 412-520 aa PF22594 GTP-eEF1A_C 418-519 aa

XP_057809778.1

526 aa

263

526

GTP_EFTU

GTP_EFTU_D2

GTP_EFTU_D3

GTP-eEF1A_C

PF00009 GTP_EFTU 94-307 aa PF03144 GTP_EFTU_D2 338-404 aa PF03143 GTP_EFTU_D3 411-519 aa PF22594 GTP-eEF1A_C 417-518 aa

XP_057809779.1

525 aa

262

525

GTP_EFTU

GTP_EFTU_D2

GTP_EFTU_D3

GTP-eEF1A_C

PF00009 GTP_EFTU 93-306 aa PF03144 GTP_EFTU_D2 337-403 aa PF03143 GTP_EFTU_D3 410-518 aa PF22594 GTP-eEF1A_C 416-517 aa

XP_057809780.1

503 aa

252

503

GTP_EFTU

GTP_EFTU_D2

GTP_EFTU_D3

GTP-eEF1A_C

PF00009 GTP_EFTU 71-284 aa PF03144 GTP_EFTU_D2 315-381 aa PF03143 GTP_EFTU_D3 388-496 aa PF22594 GTP-eEF1A_C 394-495 aa

XP_057809781.1

501 aa

250

501

GTP_EFTU

GTP_EFTU_D2

GTP_EFTU_D3

GTP-eEF1A_C

PF00009 GTP_EFTU 69-282 aa PF03144 GTP_EFTU_D2 313-379 aa PF03143 GTP_EFTU_D3 386-494 aa PF22594 GTP-eEF1A_C 392-493 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809776.1`	Pfam	`PF00009`	GTP_EFTU	Domain	96	309	8.8e-50	169.6	Elongation factor Tu GTP binding domain
`XP_057809776.1`	Pfam	`PF03144`	GTP_EFTU_D2	Domain	340	406	3.3e-09	37.8	Elongation factor Tu domain 2
`XP_057809776.1`	Pfam	`PF03143`	GTP_EFTU_D3	Domain	413	521	4.8e-25	88.6	Elongation factor Tu C-terminal domain
`XP_057809776.1`	Pfam	`PF22594`	GTP-eEF1A_C	Domain	419	520	4.2e-31	108.1	GTP-eEF1A C-terminal domain-like
`XP_057809777.1`	Pfam	`PF00009`	GTP_EFTU	Domain	95	308	8.1e-50	169.7	Elongation factor Tu GTP binding domain
`XP_057809777.1`	Pfam	`PF03144`	GTP_EFTU_D2	Domain	339	405	3.3e-09	37.8	Elongation factor Tu domain 2
`XP_057809777.1`	Pfam	`PF03143`	GTP_EFTU_D3	Domain	412	520	4.9e-25	88.6	Elongation factor Tu C-terminal domain
`XP_057809777.1`	Pfam	`PF22594`	GTP-eEF1A_C	Domain	418	519	4.2e-31	108.1	GTP-eEF1A C-terminal domain-like
`XP_057809778.1`	Pfam	`PF00009`	GTP_EFTU	Domain	94	307	9.6e-50	169.5	Elongation factor Tu GTP binding domain
`XP_057809778.1`	Pfam	`PF03144`	GTP_EFTU_D2	Domain	338	404	3.3e-09	37.8	Elongation factor Tu domain 2
`XP_057809778.1`	Pfam	`PF03143`	GTP_EFTU_D3	Domain	411	519	6.2e-25	88.3	Elongation factor Tu C-terminal domain
`XP_057809778.1`	Pfam	`PF22594`	GTP-eEF1A_C	Domain	417	518	4.4e-31	108.0	GTP-eEF1A C-terminal domain-like
`XP_057809779.1`	Pfam	`PF00009`	GTP_EFTU	Domain	93	306	9.2e-50	169.6	Elongation factor Tu GTP binding domain
`XP_057809779.1`	Pfam	`PF03144`	GTP_EFTU_D2	Domain	337	403	3.3e-09	37.8	Elongation factor Tu domain 2
`XP_057809779.1`	Pfam	`PF03143`	GTP_EFTU_D3	Domain	410	518	6.4e-25	88.2	Elongation factor Tu C-terminal domain
`XP_057809779.1`	Pfam	`PF22594`	GTP-eEF1A_C	Domain	416	517	4.3e-31	108.0	GTP-eEF1A C-terminal domain-like
`XP_057809780.1`	Pfam	`PF00009`	GTP_EFTU	Domain	71	284	9.5e-50	169.5	Elongation factor Tu GTP binding domain
`XP_057809780.1`	Pfam	`PF03144`	GTP_EFTU_D2	Domain	315	381	3.1e-09	37.8	Elongation factor Tu domain 2
`XP_057809780.1`	Pfam	`PF03143`	GTP_EFTU_D3	Domain	388	496	3.8e-25	88.9	Elongation factor Tu C-terminal domain
`XP_057809780.1`	Pfam	`PF22594`	GTP-eEF1A_C	Domain	394	495	4e-31	108.1	GTP-eEF1A C-terminal domain-like
`XP_057809781.1`	Pfam	`PF00009`	GTP_EFTU	Domain	69	282	9.5e-50	169.5	Elongation factor Tu GTP binding domain
`XP_057809781.1`	Pfam	`PF03144`	GTP_EFTU_D2	Domain	313	379	3.1e-09	37.9	Elongation factor Tu domain 2
`XP_057809781.1`	Pfam	`PF03143`	GTP_EFTU_D3	Domain	386	494	3.5e-25	89.1	Elongation factor Tu C-terminal domain
`XP_057809781.1`	Pfam	`PF22594`	GTP-eEF1A_C	Domain	392	493	4e-31	108.1	GTP-eEF1A C-terminal domain-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057953798.1
GAAAAAGGGTAGAATTCGCAGGTCATAGAAATCAATTAGGTCATACTATTAGATGACAAATTTATGAATTTAATACAGCCTCTCTCGTCTCCCTCTTCTCCAGAACTTCTCCATATATCCCTTCATCCTTCAACTCCGGCGACTACTCGTCGCTGCGACTCAGACGCAGCTGTTAGTGAATAAATTCAGGCCAGAACTTCTCAGACTCAGACGTCGCTGCGAAATTCACGCCATAACTTCTCCATCTATTCTCTCTCTCT...

XM_057953797.1
GAAAAAGGGTAGAATTCGCAGGTCATAGAAATCAATTAGGTCATACTATTAGATGACAAATTTATGAATTTAATACAGCCTCTCTCGTCTCCCTCTTCTCCAGAACTTCTCCATATATCCCTTCATCCTTCAACTCCGGCGACTACTCGTCGCTGCGACTCAGACGCAGCTGTTAGTGAATAAATTCAGGCCAGAACTTCTCAGACTCAGACGTCGCTGCGAAATTCACGCCATAACTTCTCCATCTATTCTCTCTCTCT...

CDS

6 records

下载 CDS FASTA

LOC131024278
ATGTCGGAATCGGGCACCACACATCCGACGCAGGACATCGCGGATGATATCAAGGCTCTGCAGCTCGATTCAGCTGAAGATGTTGTGATGGCTAATTCAGAAGATGGGAAGCATGATACAGTTTTGAATCCTGATAAAACAGATGGAGTGAAAGATAAGGAAAGCATTCCTCCAGATGATATTGATGATGTGGATGAACCGAAAAAGAGACACTTGAATGTTGTATTCATTGGTCACGTTGATGCCGGGAAGTCTACAAT...

LOC131024278
ATGTCGGAATCGGGCACCACACATCCGACGCAGGACATCGCGGATGATATCAAGGCTCTGCAGCTCGATTCAGCTGCTACAGAAGATGTTGTGATGGCTAATTCAGAAGATGGGAAGCATGATACAGTTTTGAATCCTGATAAAACAGATGGAGTGAAAGATAAGGAAAGCATTCCTCCAGATGATATTGATGATGTGGATGAACCGAAAAAGAGACACTTGAATGTTGTATTCATTGGTCACGTTGATGCCGGGAAGTC...

Protein

6 records

下载 Protein FASTA

XP_057809776.1
MSESGTTHPTQDIADDIKALQLDSAAEDTVMANTEDVKPDVVVNHDKTDVATEDVVMANSEDGKHDTVLNPDKTDGVKDKESIPPDDIDDVDEPKKRHLNVVFIGHVDAGKSTIGGQILYLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDEPTVKWSKERFDE...

XP_057809777.1
MSESGTTHPTQDIADDIKALQLDSAEDTVMANTEDVKPDVVVNHDKTDVATEDVVMANSEDGKHDTVLNPDKTDGVKDKESIPPDDIDDVDEPKKRHLNVVFIGHVDAGKSTIGGQILYLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDEPTVKWSKERFDEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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