Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G002388`

染色体: Chr05 坐标: 26335330-26378250 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G002388`
名称	SmilChr05G002388
描述	uncharacterized SmilChr05G002388
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	26335330 - 26378250 / `-`

ID 对照

NCBI Gene ID	`LOC131024279`
GeneID	`131024279`
locus_tag	`-`
NCBI Name	`LOC131024279`
原始查询	`LOC131024279`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcium-dependent lipid-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:841226]; symbol=AT1G48090; hit=AT1G48090; species=arabidopsis; confidence=high
产物	calcium-dependent lipid-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:841226]; symbol=AT1G48090; hit=AT1G48090; species=arabidopsis; confidence=high
Arabidopsis	`AT1G48090` (AT1G48090) calcium-dependent lipid-binding family protein [Source:NCBI gene (formerly Entrezgene);Acc:841226] identity=61.1; qcov=0.696; evalue=0; confidence=high
Rice	`Os02g0470600` - identity=64.2; qcov=0.15; evalue=0; confidence=weak
GO	-
KEGG	smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF06101 (Vps62); PF06398 (Pex24p); PF12624 (VPS13_N); PF25036 (VPS13_VAB); PF25037 (VPS13_C)
InterPro	-
eggNOG	-
NR	GeneID:131024279

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057809782.1`
2	Trans-golgi network	Trans-golgi network	0.40000	`XP_057809782.1`
3	Endosome	内体	0.40000	`XP_057809782.1`
4	Endosome membrane	内体膜	0.40000	`XP_057809782.1`
5	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057809782.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:26339599`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr5:26340589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr5:26344111`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr5:26344958`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B20,B40,C58,C62
`Chr5:26345728`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B52,C29
`Chr5:26348095`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B46,C39
`Chr5:26349300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B11,B115,B69,C8
`Chr5:26349486`	`G`	`A`	EMS_canonical_SNV	stop_gained	112	A19,A23,A24,A4,A5,A7,A9,B1,B10,B100,B105,B108,B109,B11,B111,B114,B115,B118,B119,B12,B124,B13,B130,B133,B135,B136,B137,B138,B14,B16,B17,B2,B21,B22,B23,B27,B3,B30,B31,B34,B35,B37,B38,B39,B44,B45,B47,B48,B5,B52,B59,B60,B61,B63,B66,B67,B69,B70,B72,B73,B80,B83,B84,B85,B86,B88,B89,B90,B94,B95,C13,C14,C15,C18,C22,C26,C28,C29,C3,C31,C33,C37,C41,C42,C43,C46,C47,C50,C51,C59,C60,C61,C63,C64,C65,C66,C69,C70,C71,C75,C78,C80,C82,C84,C85,C87,C9,D10,D2,D3,D4,D5
`Chr5:26349499`	`CCA`	`C`	2bp_deletion	frameshift_variant	18	A1,A14,A15,A20,B127,B58,B7,B79,C1,C12,C16,C48,C5,C57,C61,C62,C73,C79
`Chr5:26349541`	`C`	`T`	EMS_canonical_SNV	stop_gained	55	A19,A3,A5,A9,B10,B100,B104,B105,B109,B11,B117,B118,B124,B13,B133,B135,B137,B14,B17,B2,B22,B34,B35,B37,B38,B4,B44,B48,B59,B61,B63,B69,B80,B85,B89,B90,B95,C13,C22,C29,C42,C43,C46,C47,C55,C61,C65,C69,C70,C75,C78,C82,C87,D2,D5
`Chr5:26349596`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B23,B63
`Chr5:26349676`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809782.1

4213 aa

2106

4213

VPS13_N

Vps62

Pex24p

VPS13_VAB

VPS13_C

PF12624 VPS13_N 1-693 aa PF06101 Vps62 1962-2131 aa PF06101 Vps62 2215-2355 aa PF06398 Pex24p 2845-2974 aa PF25036 VPS13_VAB 3104-3534 aa PF25037 VPS13_C 3997-4108 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809782.1`	Pfam	`PF12624`	VPS13_N	Repeat	1	693	7.1e-109	366.0	VPS13-like family N-terminal region
`XP_057809782.1`	Pfam	`PF06101`	Vps62	Family	1962	2131	5.1e-27	95.2	Vacuolar protein sorting-associated protein 62
`XP_057809782.1`	Pfam	`PF06101`	Vps62	Family	2215	2355	5.1e-27	95.2	Vacuolar protein sorting-associated protein 62
`XP_057809782.1`	Pfam	`PF06398`	Pex24p	Family	2845	2974	4.5e-07	30.0	Integral peroxisomal membrane peroxin
`XP_057809782.1`	Pfam	`PF25036`	VPS13_VAB	Domain	3104	3534	2.8e-18	66.5	Vacuolar-sorting associated protein 13, adaptor binding domain
`XP_057809782.1`	Pfam	`PF25037`	VPS13_C	Domain	3997	4108	5.2e-13	49.7	Intermembrane lipid transfer protein VPS13, C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057953799.1
TTAGAATACACAGCACCTGGAAGACCCCACCACAGTTTTTCCTTTTTCACACACAACACACACTCGGACTCCTCTCCAATTCTCCCCGCGTTTCGCGTCATCGCCAAGGAGAACCGATTACCCAACAGATCGAATACTCGTTTGTCCTGCTCGTTCATGGCTCTTTTCCGCCGGCGATCGTCGCTCTCTGCTGGAATCAGCTCCTGAAACTGTCGCCTCAAACGATCGACAGCTTGATATTTCACCATGTTCGAAGCACA...

CDS

1 records

下载 CDS FASTA

LOC131024279
ATGTTCGAAGCACATGTCTTGCATTTGCTTCGGAGATACTTGGGTGAGTATGTCCATGGGTTGTCATCAGAGGCCTTGAGAATCAGTGTTTGGAAAGGTGATGTGGTTCTTAGAGATTTGAAACTGAAATCAGAAGCATTAAATGCATTGAAGCTTCCAGTGACTGTCAAAGCTGGTTTTCTTGGTACCATAACCTTGAAGGTACCTTGGAAAAGTCTTGGCAAGGAGCCAGTTATTGTTCTCATAGATCAAGTGTTTAT...

Protein

1 records

下载 Protein FASTA

XP_057809782.1
MFEAHVLHLLRRYLGEYVHGLSSEALRISVWKGDVVLRDLKLKSEALNALKLPVTVKAGFLGTITLKVPWKSLGKEPVIVLIDQVFILANPASDGRFLKEEDRERLFEAKLQQIDEAESATLEALSRSKPGNSAAGNSWLGSLISTIIGNLKISISNVHIRYEDSVSNPGHPFSCGITLAKLAAFTMDEHGNETFDTSGALDKLRKSLQLERLAVYHDTNRDPWKLEKRWEDLSPKEWVEIFQDGINESSKSRNSASSWA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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