当前解析结果
SmilChr01G001258| 统一新 Gene ID | SmilChr01G001258 |
|---|---|
| 名称 | SmilChr01G001258 |
| 描述 | rho GTPase-activating protein 7-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 25265830 - 25279325 / - |
| NCBI Gene ID | LOC131024358 |
|---|---|
| GeneID | 131024358 |
| locus_tag | - |
| NCBI Name | LOC131024358 |
| 原始查询 | LOC131024358 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | rho GTPase-activating protein 7-like |
| 产物 | rho GTPase-activating protein 7-like |
| Arabidopsis | AT5G19390 (AT5G19390)Rho GTPase activation protein (RhoGAP) with PH domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832059] identity=66.8; qcov=1.02; evalue=0; confidence=high |
| Rice | Os07g0658300 (Spin6.2)- identity=67.3; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0007165 (signal transduction) |
| KEGG | - |
| Pfam | PF00169 (PH); PF00620 (RhoGAP); PF14389 (Lzipper-MIP1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024358 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057809850.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057809860.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057809850.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057809850.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057809850.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:25266136 |
GT |
G |
1bp_deletion | frameshift_variant | 8 | B44,B50,B53,B62,B71,C61,C62,D5 |
Chr1:25266213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B8,C1,C44,C70 |
Chr1:25266226 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | A10,B101,B108,B117,B18,B76,C23,C54 |
Chr1:25266659 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr1:25266663 |
TAG |
T |
2bp_deletion | frameshift_variant | 7 | B136,B56,B96,C10,C27,C79,D10 |
Chr1:25266729 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr1:25266767 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B136,C27,C43 |
Chr1:25267889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B114,B132,B16,B84,C79 |
Chr1:25267942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr1:25270978 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr1:25271090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr1:25272495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809850.1PF00169
PH 20-124 aa
PF00620
RhoGAP 181-325 aa
PF14389
Lzipper-MIP1 612-692 aa
XP_057809856.1PF00169
PH 20-124 aa
PF00620
RhoGAP 181-325 aa
PF14389
Lzipper-MIP1 612-692 aa
XP_057809860.1PF00169
PH 20-124 aa
PF00620
RhoGAP 181-325 aa
PF14389
Lzipper-MIP1 612-692 aa
XP_057809862.1PF00169
PH 20-124 aa
PF00620
RhoGAP 181-325 aa
PF14389
Lzipper-MIP1 612-692 aa
XP_057809867.1PF00169
PH 20-124 aa
PF00620
RhoGAP 181-324 aa
PF14389
Lzipper-MIP1 611-691 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809850.1 |
Pfam | PF00169 |
PH | Domain | 20 | 124 | 4.2e-13 | 50.4 | PH domain |
XP_057809850.1 |
Pfam | PF00620 |
RhoGAP | Domain | 181 | 325 | 9e-34 | 117.2 | RhoGAP domain |
XP_057809850.1 |
Pfam | PF14389 |
Lzipper-MIP1 | Family | 612 | 692 | 1.7e-21 | 77.0 | Leucine-zipper of ternary complex factor MIP1 |
XP_057809856.1 |
Pfam | PF00169 |
PH | Domain | 20 | 124 | 4.2e-13 | 50.4 | PH domain |
XP_057809856.1 |
Pfam | PF00620 |
RhoGAP | Domain | 181 | 325 | 9e-34 | 117.2 | RhoGAP domain |
XP_057809856.1 |
Pfam | PF14389 |
Lzipper-MIP1 | Family | 612 | 692 | 1.7e-21 | 77.0 | Leucine-zipper of ternary complex factor MIP1 |
XP_057809860.1 |
Pfam | PF00169 |
PH | Domain | 20 | 124 | 4.2e-13 | 50.4 | PH domain |
XP_057809860.1 |
Pfam | PF00620 |
RhoGAP | Domain | 181 | 325 | 8.9e-34 | 117.2 | RhoGAP domain |
XP_057809860.1 |
Pfam | PF14389 |
Lzipper-MIP1 | Family | 612 | 692 | 2e-21 | 76.8 | Leucine-zipper of ternary complex factor MIP1 |
XP_057809862.1 |
Pfam | PF00169 |
PH | Domain | 20 | 124 | 4.2e-13 | 50.4 | PH domain |
XP_057809862.1 |
Pfam | PF00620 |
RhoGAP | Domain | 181 | 325 | 8.9e-34 | 117.2 | RhoGAP domain |
XP_057809862.1 |
Pfam | PF14389 |
Lzipper-MIP1 | Family | 612 | 692 | 2e-21 | 76.8 | Leucine-zipper of ternary complex factor MIP1 |
XP_057809867.1 |
Pfam | PF00169 |
PH | Domain | 20 | 124 | 4.2e-13 | 50.4 | PH domain |
XP_057809867.1 |
Pfam | PF00620 |
RhoGAP | Domain | 181 | 324 | 2.2e-32 | 112.7 | RhoGAP domain |
XP_057809867.1 |
Pfam | PF14389 |
Lzipper-MIP1 | Family | 611 | 691 | 1.7e-21 | 77.0 | Leucine-zipper of ternary complex factor MIP1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。