Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003085`

染色体: Chr05 坐标: 39030085-39031489 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003085`
名称	SmilChr05G003085
描述	uncharacterized SmilChr05G003085
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	39030085 - 39031489 / `+`

ID 对照

NCBI Gene ID	`LOC131024361`
GeneID	`131024361`
locus_tag	`-`
NCBI Name	`LOC131024361`
原始查询	`LOC131024361`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	WD repeat and SOF domain-containing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:828962]; symbol=AT4G28450; hit=AT4G28450; species=arabidopsis; confidence=low
产物	WD repeat and SOF domain-containing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:828962]; symbol=AT4G28450; hit=AT4G28450; species=arabidopsis; confidence=low
Arabidopsis	`AT4G28450` (AT4G28450) WD repeat and SOF domain-containing protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:828962] identity=80; qcov=0.443; evalue=2.78e-14; confidence=low
Rice	`-` -
GO	GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0005515 (protein binding); GO:0005730 (nucleolus); GO:0032040 (small-subunit processome)
KEGG	-
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:131024361

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057809853.1`
2	Nucleus	细胞核	0.80000	`XP_057809854.1`
3	Chromosome	染色体	0.00000	`XP_057809852.1`
4	Centromere	着丝粒	0.00000	`XP_057809852.1`
5	Chromatin	染色质	0.00000	`XP_057809852.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:39030294`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr5:39030443`	`C`	`CTA`	2bp_insertion	frameshift_variant	9	A21,A9,B104,B119,B123,B134,B21,B87,C3
`Chr5:39030454`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	C76,C9
`Chr5:39030454`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C76,C9
`Chr5:39030713`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B114
`Chr5:39030713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114
`Chr5:39030719`	`C`	`T`	EMS_canonical_SNV	stop_gained	9	A21,A9,B104,B119,B123,B134,B21,B87,C3
`Chr5:39030723`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr5:39030762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B115,B91,C17
`Chr5:39030816`	`GT`	`G`	1bp_deletion	frameshift_variant	20	A21,A9,B118,B123,B134,B137,B18,B2,B21,B51,B59,B80,C23,C25,C3,C40,C50,C51,C59,C67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809852.1

109 aa

109

WD40

PF00400 WD40 6-39 aa

XP_057809853.1

83 aa

WD40

PF00400 WD40 6-39 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809852.1`	Pfam	`PF00400`	WD40	Repeat	6	39	1.6e-07	32.3	WD domain, G-beta repeat
`XP_057809853.1`	Pfam	`PF00400`	WD40	Repeat	6	39	2.5e-07	31.6	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057953870.1
TTCGAAAAATGAATGAGACAAGATGTGTGCACAAAGATCATGTTTCTGCAGTAATGGATATTGATTATTCACCAACTGGCCGTGAGTTTGTAACTAGATCTTATGATAGAACTGTCAGAATCTTCCAATATAATAGTGGTCACAACCGAGAAATATATCATACTAAGAGAATGCAGAGGGTCTTTTGTGTGAAGTTCAGGAACGACGGAACTTTGTATTCGACTTTGGAAGGCCAAAGCGTCCGAGCAACTGGGAGTTAG...

XM_057953871.1
TTCGAAAAATGAATGAGACAAGATGTGTGCACAAAGATCATGTTTCTGCAGTAATGGATATTGATTATTCACCAACTGGCCGTGAGTTTGTAACTAGATCTTATGATAGAACTGGTCTTTTGTGTGAAGTTCAGGAACGACGGAACTTTGTATTCGACTTTGGAAGGCCAAAGCGTCCGAGCAACTGGGAGTTAGATTGGTTTCTGATTTATTATCAAATTTCTTCTAATCTGGAGAGAAAGAGATAGGAGAAAAAACAT...

CDS

3 records

下载 CDS FASTA

LOC131024361
ATGAATGAGACAAGATGTGTGCACAAAGATCATGTTTCTGCAGTAATGGATATTGATTATTCACCAACTGGCCGTGAGTTTGTAACTAGATCTTATGATAGAACTGGTCTTTTGTGTGAAGTTCAGGAACGACGGAACTTTGTATTCGACTTTGGAAGGCCAAAGCGTCCGAGCAACTGGGAGTTAGATTGGTTTCTGATTTATTATCAAATTTCTTCTAATCTGGAGAGAAAGAGATAG

LOC131024361
ATGAATGAGACAAGATGTGTGCACAAAGATCATGTTTCTGCAGTAATGGATATTGATTATTCACCAACTGGCCGTGAGTTTGTAACTAGATCTTATGATAGAACTGTCAGAATCTTCCAATATAATAGTGGTCACAACCGAGAAATATATCATACTAAGAGAATGCAGAGGGTCTTTTGTGTGAAGTTCAGGAACGACGGAACTTTGTATTCGACTTTGGAAGGCCAAAGCGTCCGAGCAACTGGGAGTTAG

Protein

3 records

下载 Protein FASTA

XP_057809852.1
MNETRCVHKDHVSAVMDIDYSPTGREFVTRSYDRTVRIFQYNSGHNREIYHTKRMQRVFCVKFRNDGTLYSTLEGQSVRATGSCMNLSLSTNDISFFVSGQYIFSKFFT

XP_057809853.1
MNETRCVHKDHVSAVMDIDYSPTGREFVTRSYDRTVRIFQYNSGHNREIYHTKRMQRVFCVKFRNDGTLYSTLEGQSVRATGS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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