Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003115`

染色体: Chr05 坐标: 39689886-39692646 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003115`
名称	SmilChr05G003115
描述	probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	39689886 - 39692646 / `-`

ID 对照

NCBI Gene ID	`LOC131024383`
GeneID	`131024383`
locus_tag	`-`
NCBI Name	`LOC131024383`
原始查询	`LOC131024383`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1
产物	probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1
Arabidopsis	`AT5G53850` (AT5G53850) haloacid dehalogenase-like hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835466] identity=64.2; qcov=0.813; evalue=3.03e-109; confidence=high
Rice	`Os11g0484000` (OsDEP) - identity=63; qcov=0.823; evalue=6.28e-108; confidence=high
GO	GO:0000287 (magnesium ion binding); GO:0019509 (GO:0019509); GO:0043874 (acireductone synthase activity)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00702 (Hydrolase)
InterPro	-
eggNOG	-
NR	GeneID:131024383

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057809868.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057809868.1`
3	Nucleus	细胞核	0.00000	`XP_057809868.1`
4	Chromosome	染色体	0.00000	`XP_057809868.1`
5	Centromere	着丝粒	0.00000	`XP_057809868.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:39690135`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B31,C28
`Chr5:39691236`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B27,B69
`Chr5:39692241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr5:39692386`	`C`	`CT`	1bp_insertion	frameshift_variant	1	C27
`Chr5:39692386`	`C`	`CT`	1bp_insertion	CDS_variant	1	C27
`Chr5:39692437`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B77
`Chr5:39692437`	`AG`	`A`	1bp_deletion	CDS_variant	1	B77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057809868.1

325 aa

162

325

Hydrolase

PF00702 Hydrolase 85-296 aa

XP_057809869.1

299 aa

150

299

Hydrolase

PF00702 Hydrolase 85-270 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057809868.1`	Pfam	`PF00702`	Hydrolase	Domain	85	296	1.1e-11	46.2	haloacid dehalogenase-like hydrolase
`XP_057809869.1`	Pfam	`PF00702`	Hydrolase	Domain	85	270	6.2e-12	47.0	haloacid dehalogenase-like hydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057953885.1
ATAAAAAATCACAAAAATGTTGGGACATATTTATGATTTTTGGGCATTTTAAAAAATGAGTCTAAAAGATAAAATATAGGTGCAGAATAGAAGATTGGAATAAGCTTTTATTATGATCCAAACAAGAAGCCAAGAGGTTCACTCAAAATCAGAAGAAAGCAGCATTTCACAGAAACAAGAATGGCTGCAACTGCAGTTTCAGCAGCCCCTATTTTCGTCAGCAGAGTGAAGGAAACTAAGGGCCGCCAATTCTACCATCT...

XM_057953886.1
GATTTTTGGGCATTTTAAAAAATGAGTCTAAAAGATAAAATATAGGTGCAGAATAGAAGATTGGAATAAGCTTTTATTATGATCCAAACAAGAAGCCAAGAGGTTCACTCAAAATCAGAAGAAAGCAGCATTTCACAGAAACAAGAATGGCTGCAACTGCAGTTTCAGCAGCCCCTATTTTCGTCAGCAGAGTGAAGGAAACTAAGGGCCGCCAATTCTACCATCTGGGCTGGGTTTCAGGTGTGTGTGGGTCTGTGTTG...

CDS

2 records

下载 CDS FASTA

LOC131024383
ATGGCTGCAACTGCAGTTTCAGCAGCCCCTATTTTCGTCAGCAGAGTGAAGGAAACTAAGGGCCGCCAATTCTACCATCTGGGCTGGGTTTCAGGTGTGTGTGGGTCTGTGTTGCCGTGGCCGCATAAGTCTCCCTACTTCCTCAGCCTTAAGGGTCCAATTCGAATTTCACAGAGAGTTGTAAGTGGACATCGAAATACTAAAGTGAGTGCTAAGGCAGGGAGTTCAAGTAATGGCATCAAACCAGCAAGACGATGTAT...

Protein

2 records

下载 Protein FASTA

XP_057809868.1
MAATAVSAAPIFVSRVKETKGRQFYHLGWVSGVCGSVLPWPHKSPYFLSLKGPIRISQRVVSGHRNTKVSAKAGSSSNGIKPARRCIVLDIEGTTTPISFVTDVLFPYARDNVRKHLELTYDTAETQDDIESLRAQVKEDLEKDVVGAVPIPTDGDREEVITSLVANVEAMIKADRKITSLKQLQGHIWRGGFDSNEIEAVVYDDVPEALEKWQAMGLKVYIYSSGSRLAQRLIFGNTNFGDLRNYLCGFFDTSIGNKKE...

XP_057809869.1
MAATAVSAAPIFVSRVKETKGRQFYHLGWVSGVCGSVLPWPHKSPYFLSLKGPIRISQRVVSGHRNTKVSAKAGSSSNGIKPARRCIVLDIEGTTTPISFVTDVLFPYARDNVRKHLELTYDTAETQDDIESLRAQVKEDLEKDVVGAVPIPTDGDREEGHIWRGGFDSNEIEAVVYDDVPEALEKWQAMGLKVYIYSSGSRLAQRLIFGNTNFGDLRNYLCGFFDTSIGNKKETKSYIEIREYLGVDDPSAILFITDVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器