Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003517`

染色体: Chr05 坐标: 46983192-46985368 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003517`
名称	SmilChr05G003517
描述	phenylcoumaran benzylic ether reductase TP7-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	46983192 - 46985368 / `+`

ID 对照

NCBI Gene ID	`LOC131024554`
GeneID	`131024554`
locus_tag	`-`
NCBI Name	`LOC131024554`
原始查询	`LOC131024554`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phenylcoumaran benzylic ether reductase TP7-like
产物	phenylcoumaran benzylic ether reductase TP7-like
Arabidopsis	`AT4G39230` (AT4G39230) NmrA-like negative transcriptional regulator family protein [Source:NCBI gene (formerly Entrezgene);Acc:830078] identity=63.7; qcov=0.997; evalue=3.15e-141; confidence=high
Rice	`Os06g0472200` - identity=58.8; qcov=0.997; evalue=2.6e-126; confidence=high
GO	GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF03435 (Sacchrp_dh_NADP); PF05368 (NmrA); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131024554

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057810053.1`
2	Cytoplasm	细胞质	0.60000	`XP_057810053.1`
3	Nucleus	细胞核	0.00000	`XP_057810053.1`
4	Chromosome	染色体	0.00000	`XP_057810053.1`
5	Centromere	着丝粒	0.00000	`XP_057810053.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:46983561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr5:46983590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr5:46983630`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B127
`Chr5:46983865`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:46984315`	`GC`	`G`	1bp_deletion	frameshift_variant	3	B20,B98,C60
`Chr5:46984315`	`GC`	`G`	1bp_deletion	CDS_variant	3	B20,B98,C60
`Chr5:46984434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr5:46984509`	`AGT`	`A`	2bp_deletion	frameshift_variant	1	B31
`Chr5:46984509`	`AGT`	`A`	2bp_deletion	CDS_variant	1	B31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810053.1

304 aa

152

304

NmrA

Epimerase

Sacchrp_dh_NADP

GDP_Man_Dehyd

3Beta_HSD

NAD_binding_10

PF05368 NmrA 3-300 aa PF01370 Epimerase 5-83 aa PF03435 Sacchrp_dh_NADP 5-89 aa PF16363 GDP_Man_Dehyd 6-76 aa PF01073 3Beta_HSD 6-91 aa PF13460 NAD_binding_10 9-148 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810053.1`	Pfam	`PF05368`	NmrA	Family	3	300	1.6e-89	301.2	NmrA-like family
`XP_057810053.1`	Pfam	`PF01370`	Epimerase	Family	5	83	2.6e-08	34.3	NAD dependent epimerase/dehydratase family
`XP_057810053.1`	Pfam	`PF03435`	Sacchrp_dh_NADP	Family	5	89	2.4e-06	28.6	Saccharopine dehydrogenase NADP binding domain
`XP_057810053.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	6	76	3.3e-07	30.8	GDP-mannose 4,6 dehydratase
`XP_057810053.1`	Pfam	`PF01073`	3Beta_HSD	Family	6	91	1.1e-06	28.6	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057810053.1`	Pfam	`PF13460`	NAD_binding_10	Domain	9	148	2.6e-14	54.2	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954070.1
GATTGCTAGGTAGAGTGCATTAAAGTATTTAGGATCTAACACATTTTTTTGATGTATAATTCTTTTTTAATTTTTTTTATGGTTTAGTTTATTCTGACGCAGAAAACTATGAGACTCCGTATGAACTCAGTAAAAAAAACTCTAGACCGCAATTTGTGGGCCAATCCAATAAGAAAATCTCTAAACTGGAGAAATTTTATAATGCTAAAAATGGATGATGGGTGGATGCTAATTGTTTATTTATACGTGAACCCATCTCA...

CDS

1 records

下载 CDS FASTA

LOC131024554
ATGGGAGAGAAGATCTTGATAATCGGTGGAACAGGATACATCGGCAAATTCGTAGTTGAAGCCAGCGCCAAATCTGGGCATCCCACTTATGCTTTGATGAGAGAGGCATCCCTCTCTGATCCAGCCAAATCCCAGCTCGTTGAGACCTTCAAGAAATCTGGTGTCACCATCCTAACTGGAGATCTGAATGATCATGAGAGCTTGGTGAAGGCTATAAAGCAAGTAGATGTGGTTATATCAACTGTAGGCTTCATGCAGAT...

Protein

1 records

下载 Protein FASTA

XP_057810053.1
MGEKILIIGGTGYIGKFVVEASAKSGHPTYALMREASLSDPAKSQLVETFKKSGVTILTGDLNDHESLVKAIKQVDVVISTVGFMQIADQYKIIAAIKEAGNVKRFLPSEFGNDIDRGHAVDPINPNLQLKVEIRRAIEAEGIPYTYVVCNLIASFALSSFLQLGATAPPRDKVVIPGNGNVQAVFNEEHDIGAYTIKATVDPRTLNKILYIKPPHNIYSFNELVHCWEKKIGKTLDKIYVPEEEILKQMKESALNVIVW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器