当前解析结果
SmilChr05G003512| 统一新 Gene ID | SmilChr05G003512 |
|---|---|
| 名称 | SmilChr05G003512 |
| 描述 | uncharacterized SmilChr05G003512 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 46903720 - 46907655 / + |
| NCBI Gene ID | LOC131024567 |
|---|---|
| GeneID | 131024567 |
| locus_tag | - |
| NCBI Name | LOC131024567 |
| 原始查询 | LOC131024567 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | M28 Zn-peptidase nicastrin [Source:NCBI gene (formerly Entrezgene);Acc:823558]; symbol=AT3G44330; hit=AT3G44330; species=arabidopsis; confidence=low |
| 产物 | M28 Zn-peptidase nicastrin [Source:NCBI gene (formerly Entrezgene);Acc:823558]; symbol=AT3G44330; hit=AT3G44330; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G44330 (AT3G44330)M28 Zn-peptidase nicastrin [Source:NCBI gene (formerly Entrezgene);Acc:823558] identity=78.4; qcov=0.339; evalue=2.71e-13; confidence=low |
| Rice | Os08g0102100- identity=75.7; qcov=0.339; evalue=5.58e-13; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024567 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057810065.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057810070.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057810070.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810065.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810065.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:46904762 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr5:46904778 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | D10,D11 |
Chr5:46904778 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr5:46904800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr5:46906053 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,D6 |
Chr5:46906067 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B132,C11,C74 |
Chr5:46906763 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr5:46906777 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C40,C50 |
Chr5:46906809 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr5:46906839 |
C |
CT |
1bp_insertion | frameshift_variant | 3 | B114,C23,C80 |
Chr5:46906839 |
C |
CT |
1bp_insertion | CDS_variant | 3 | B114,C23,C80 |
Chr5:46906852 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C46 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
23 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。