Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G003525

染色体: Chr05 坐标: 47127702-47135345 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G003525
名称SmilChr05G003525
描述extra-large guanine nucleotide-binding protein 3
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向47127702 - 47135345 / +

ID 对照

NCBI Gene IDLOC131024597
GeneID131024597
locus_tag-
NCBI NameLOC131024597
原始查询LOC131024597

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述extra-large guanine nucleotide-binding protein 3
产物extra-large guanine nucleotide-binding protein 3
ArabidopsisAT1G31930 (XLG3)
extra-large GTP-binding protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:840083]
identity=66.1; qcov=1.02; evalue=0; confidence=high
RiceOs11g0206700
-
identity=66; qcov=1; evalue=0; confidence=high
GOGO:0001664 (G protein-coupled receptor binding); GO:0003924 (GTPase activity); GO:0005834 (heterotrimeric G-protein complex); GO:0007188 (adenylate cyclase-modulating G protein-coupled receptor signaling pathway); GO:0019001 (guanyl nucleotide binding); GO:0031683 (G-protein beta/gamma-subunit complex binding)
KEGG-
PfamPF00503 (G-alpha)
InterPro-
eggNOG-
NRGeneID:131024597

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057810088.1
2 Cytosol 细胞质基质 0.40000 XP_057810088.1
3 Cytoplasm 细胞质 0.20000 XP_057810088.1
4 Nucleus 细胞核 0.00000 XP_057810088.1
5 Chromosome 染色体 0.00000 XP_057810088.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:47128811 C T EMS_canonical_SNV CDS_variant 1 D6
Chr5:47129288 G A EMS_canonical_SNV CDS_variant 5 B48,B98,C35,C61,C80
Chr5:47129618 G A EMS_canonical_SNV CDS_variant 1 C35
Chr5:47132511 C T EMS_canonical_SNV CDS_variant 3 B108,B122,B94
Chr5:47132616 G A EMS_canonical_SNV CDS_variant 1 C42
Chr5:47133133 G A EMS_canonical_SNV CDS_variant 1 D11
Chr5:47133330 G A EMS_canonical_SNV CDS_variant 1 C35
Chr5:47133620 C T EMS_canonical_SNV CDS_variant 3 B135,C82,D6
Chr5:47134574 C T EMS_canonical_SNV CDS_variant 1 B33
Chr5:47134589 G A EMS_canonical_SNV CDS_variant 2 B101,B102
Chr5:47134600 C T EMS_canonical_SNV CDS_variant 1 D4
Chr5:47134622 G A EMS_canonical_SNV CDS_variant 5 B48,B98,C35,C61,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057810088.1
862 aa
N
1
431
862
G-alpha
C
PF00503 G-alpha 442-828 aa
XP_057810089.1
862 aa
N
1
431
862
G-alpha
C
PF00503 G-alpha 442-828 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057810088.1 Pfam PF00503 G-alpha Domain 442 828 6.9e-74 249.7 G-protein alpha subunit
XP_057810089.1 Pfam PF00503 G-alpha Domain 442 828 6.9e-74 249.7 G-protein alpha subunit

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057954106.1
GCACGCGCGACCCCAATAAATTTTAATCATCACTGCAGACTCAAACCGTGCAATCACACGGACCCACCTAATCTCCCCCTTAATCGTCGTCTCACCTCCTCCAACTATACATACAACTTTCCTGTACATATATGTGCAGGCCATCATTTTTATGTGCTATTTTCTCCAAAAGCTATATTCTTTGTAGTTCTAGCCTTTTTGATTTCCAGCGTTGAAGCTTTAAAGAAAGCAGCTTTTAAAAATGAGGACTGTTGATTCAC...
XM_057954105.1
TTTCCTCTTCTTTATGAGCATAAAGCTCCTACCTTTTTGTAAAGTCAAATTTTTTCAACCCTTTTGCTTTAAATCTCTGAATTCCCTTCTTTATTTTGTACTTTGAAAACTGTGATTTTTGTGTGTGTTACAAATGGGGTCCTGTAACGGAGTTGGTTCGAAAGATTTTCTTGCAATGGGATCTAAAGAGCTTTCTACAAATCCGGGTACGGCGGTACGTGAAGCAATGTCGTTGGGCCGTGCTGGTTTTGATTACTTGC...

CDS

2 records

下载 CDS FASTA
LOC131024597
ATGGAGGAAAATGGGGCAGAGGATTGGAGGGAGATGGTGAGGAAAATGCTTCCTCCAGGAGCGTCCATCCCGGATGAGGACAGAATGGATTATTCGATTGCTATTGAGTACAACGGCCCTCCAGTTTCGTATGAGCTCCCCAGAGTGGAGCCTCTTGACATGGATGACGATGCAATTCCAACTGCTGAGCCTGTTTCAGAATCTCGAAGATCAGTGGCTCGTGAAACAGCAGCTGTAGTAGAACCAATACCATTGCCCAT...
LOC131024597
ATGGAGGAAAATGGGGCAGAGGATTGGAGGGAGATGGTGAGGAAAATGCTTCCTCCAGGAGCGTCCATCCCGGATGAGGACAGAATGGATTATTCGATTGCTATTGAGTACAACGGCCCTCCAGTTTCGTATGAGCTCCCCAGAGTGGAGCCTCTTGACATGGATGACGATGCAATTCCAACTGCTGAGCCTGTTTCAGAATCTCGAAGATCAGTGGCTCGTGAAACAGCAGCTGTAGTAGAACCAATACCATTGCCCAT...

Protein

2 records

下载 Protein FASTA
XP_057810088.1
MEENGAEDWREMVRKMLPPGASIPDEDRMDYSIAIEYNGPPVSYELPRVEPLDMDDDAIPTAEPVSESRRSVARETAAVVEPIPLPMSRIARVTSPTNQSPRMSGSSESGVSVLQNNDFASHSASASPGSVHSRDSHVAKEHANEGRRATVVTFNTVDRSERRVVDAEKQVYPEFVSVTKEKKKRKKTRVCYRCGRGKWETKESCLVCDAKYCSNCVLRAMGSMPEGRKCVTCIGEPIDETNRSKLGKQSRLLSRLLSPL...
XP_057810089.1
MEENGAEDWREMVRKMLPPGASIPDEDRMDYSIAIEYNGPPVSYELPRVEPLDMDDDAIPTAEPVSESRRSVARETAAVVEPIPLPMSRIARVTSPTNQSPRMSGSSESGVSVLQNNDFASHSASASPGSVHSRDSHVAKEHANEGRRATVVTFNTVDRSERRVVDAEKQVYPEFVSVTKEKKKRKKTRVCYRCGRGKWETKESCLVCDAKYCSNCVLRAMGSMPEGRKCVTCIGEPIDETNRSKLGKQSRLLSRLLSPL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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