当前解析结果
SmilChr05G003525| 统一新 Gene ID | SmilChr05G003525 |
|---|---|
| 名称 | SmilChr05G003525 |
| 描述 | extra-large guanine nucleotide-binding protein 3 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 47127702 - 47135345 / + |
| NCBI Gene ID | LOC131024597 |
|---|---|
| GeneID | 131024597 |
| locus_tag | - |
| NCBI Name | LOC131024597 |
| 原始查询 | LOC131024597 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | extra-large guanine nucleotide-binding protein 3 |
| 产物 | extra-large guanine nucleotide-binding protein 3 |
| Arabidopsis | AT1G31930 (XLG3)extra-large GTP-binding protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:840083] identity=66.1; qcov=1.02; evalue=0; confidence=high |
| Rice | Os11g0206700- identity=66; qcov=1; evalue=0; confidence=high |
| GO | GO:0001664 (G protein-coupled receptor binding); GO:0003924 (GTPase activity); GO:0005834 (heterotrimeric G-protein complex); GO:0007188 (adenylate cyclase-modulating G protein-coupled receptor signaling pathway); GO:0019001 (guanyl nucleotide binding); GO:0031683 (G-protein beta/gamma-subunit complex binding) |
| KEGG | - |
| Pfam | PF00503 (G-alpha) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024597 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057810088.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057810088.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057810088.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057810088.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057810088.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:47128811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr5:47129288 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B48,B98,C35,C61,C80 |
Chr5:47129618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr5:47132511 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B108,B122,B94 |
Chr5:47132616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr5:47133133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr5:47133330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr5:47133620 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B135,C82,D6 |
Chr5:47134574 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr5:47134589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,B102 |
Chr5:47134600 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr5:47134622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B48,B98,C35,C61,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057810088.1PF00503
G-alpha 442-828 aa
XP_057810089.1PF00503
G-alpha 442-828 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810088.1 |
Pfam | PF00503 |
G-alpha | Domain | 442 | 828 | 6.9e-74 | 249.7 | G-protein alpha subunit |
XP_057810089.1 |
Pfam | PF00503 |
G-alpha | Domain | 442 | 828 | 6.9e-74 | 249.7 | G-protein alpha subunit |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。