当前解析结果
SmilChr05G003538| 统一新 Gene ID | SmilChr05G003538 |
|---|---|
| 名称 | SmilChr05G003538 |
| 描述 | CSC1-like protein At1g32090 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 47252470 - 47259557 / + |
| NCBI Gene ID | LOC131024608 |
|---|---|
| GeneID | 131024608 |
| locus_tag | - |
| NCBI Name | LOC131024608 |
| 原始查询 | LOC131024608 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CSC1-like protein At1g32090 |
| 产物 | CSC1-like protein At1g32090 |
| Arabidopsis | AT1G32090 (AT1G32090)early-responsive to dehydration stress protein (ERD4) [Source:NCBI gene (formerly Entrezgene);Acc:840101] identity=69.9; qcov=1.02; evalue=0; confidence=high |
| Rice | Os10g0579100 (OsOSCA1.4)- identity=66.6; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005227 (calcium-activated cation channel activity); GO:0005886 (plasma membrane) |
| KEGG | - |
| Pfam | PF02714 (RSN1_7TM); PF13967 (RSN1_TM); PF14703 (PHM7_cyt) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024608 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057810100.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057810100.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057810100.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057810100.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057810100.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:47253174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B48,B98,C35,C61,C80 |
Chr5:47253207 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B17,C77 |
Chr5:47254724 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B112,B122,B94 |
Chr5:47255514 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B48,B98,C35,C61,C80 |
Chr5:47256392 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B21,B68,C48 |
Chr5:47256461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B48,C35,C61,C80 |
Chr5:47257236 |
ATG |
A |
2bp_deletion | frameshift_variant | 8 | B125,B38,B48,B7,B95,C28,C72,C76 |
Chr5:47257261 |
T |
TGA |
2bp_insertion | frameshift_variant | 47 | A15,A23,A8,A9,B102,B118,B121,B122,B123,B127,B128,B139,B15,B19,B21,B35,B38,B4,B45,B48,B54,B56,B57,B6,B64,B67,B87,B88,B9,B97,C12,C13,C20,C21,C23,C25,C46,C48,C54,C60,C63,C66,C73,C85,C9,D1,D2 |
Chr5:47257265 |
ACC |
A |
2bp_deletion | frameshift_variant | 46 | A15,A23,A8,A9,B102,B118,B121,B122,B123,B127,B128,B139,B19,B21,B35,B38,B4,B45,B48,B56,B57,B6,B64,B67,B87,B88,B9,B97,C12,C13,C20,C21,C23,C25,C46,C48,C51,C54,C6,C63,C66,C73,C85,C9,D1,D2 |
Chr5:47257279 |
TCC |
T |
2bp_deletion | frameshift_variant | 5 | A15,B123,B88,C46,C73 |
Chr5:47257279 |
TCC |
T |
2bp_deletion | CDS_variant | 5 | A15,B123,B88,C46,C73 |
Chr5:47257978 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810100.1PF13967
RSN1_TM 7-179 aa
PF14703
PHM7_cyt 200-362 aa
PF02714
RSN1_7TM 373-645 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810100.1 |
Pfam | PF13967 |
RSN1_TM | Family | 7 | 179 | 1.1e-39 | 136.3 | Late exocytosis, associated with Golgi transport |
XP_057810100.1 |
Pfam | PF14703 |
PHM7_cyt | Domain | 200 | 362 | 4.8e-48 | 164.4 | Cytosolic domain of 10TM putative phosphate transporter |
XP_057810100.1 |
Pfam | PF02714 |
RSN1_7TM | Family | 373 | 645 | 3.1e-83 | 280.1 | Calcium-dependent channel, 7TM region, putative phosphate |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。