当前解析结果
SmilChr05G003251| 统一新 Gene ID | SmilChr05G003251 |
|---|---|
| 名称 | SmilChr05G003251 |
| 描述 | uncharacterized SmilChr05G003251 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 41908089 - 41913254 / + |
| NCBI Gene ID | LOC131024613 |
|---|---|
| GeneID | 131024613 |
| locus_tag | - |
| NCBI Name | LOC131024613 |
| 原始查询 | LOC131024613 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SLH domain protein [Source:NCBI gene (formerly Entrezgene);Acc:822156]; symbol=AT3G25680; hit=AT3G25680; species=arabidopsis; confidence=high |
| 产物 | SLH domain protein [Source:NCBI gene (formerly Entrezgene);Acc:822156]; symbol=AT3G25680; hit=AT3G25680; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G25680 (AT3G25680)SLH domain protein [Source:NCBI gene (formerly Entrezgene);Acc:822156] identity=46.5; qcov=1; evalue=1.83e-160; confidence=high |
| Rice | Os03g0862100- identity=34.5; qcov=0.814; evalue=4.37e-62; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024613 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057810107.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057810107.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057810107.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057810107.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057810107.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:41908284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr5:41908332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B83,C15,C52,C84 |
Chr5:41908928 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,D11 |
Chr5:41908982 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr5:41911788 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr5:41911943 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B65 |
Chr5:41911943 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B65 |
Chr5:41912557 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,B63 |
Chr5:41912585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,D6 |
Chr5:41912591 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B44,C42 |
Chr5:41912626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B44,C42 |
Chr5:41912817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B38,B75,C35 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。