当前解析结果
SmilChr05G003276| 统一新 Gene ID | SmilChr05G003276 |
|---|---|
| 名称 | SmilChr05G003276 |
| 描述 | transcriptional repressor ILP1 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 42578727 - 42584043 / - |
| NCBI Gene ID | LOC131024630 |
|---|---|
| GeneID | 131024630 |
| locus_tag | - |
| NCBI Name | LOC131024630 |
| 原始查询 | LOC131024630 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcriptional repressor ILP1 |
| 产物 | transcriptional repressor ILP1 |
| Arabidopsis | AT5G08550 (ILP1)GC-rich sequence DNA-binding factor-like protein [Source:NCBI gene (formerly Entrezgene);Acc:830755] identity=47.7; qcov=1.02; evalue=0; confidence=high |
| Rice | Os03g0853700- identity=42; qcov=1.07; evalue=0; confidence=medium |
| GO | GO:0000390 (spliceosomal complex disassembly); GO:0000398 (mRNA splicing, via spliceosome); GO:0003677 (DNA binding); GO:0005634 (nucleus); GO:0071008 (U2-type post-mRNA release spliceosomal complex) |
| KEGG | - |
| Pfam | PF07842 (GCFC); PF15458 (NTR2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024630 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057810117.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057810117.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057810117.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057810117.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057810117.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:42578884 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr5:42578903 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr5:42578907 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr5:42579015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr5:42579902 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr5:42580066 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr5:42580894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,B84 |
Chr5:42581145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B121,B24,C4,D10 |
Chr5:42581255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B121,B24,C4,D10 |
Chr5:42581330 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,C35 |
Chr5:42582580 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,B14 |
Chr5:42582582 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810117.1PF15458
NTR2 178-320 aa
PF07842
GCFC 641-842 aa
XP_057810118.1PF15458
NTR2 178-320 aa
PF07842
GCFC 641-842 aa
XP_057810119.1PF15458
NTR2 178-320 aa
PF07842
GCFC 641-842 aa
XP_057810120.1PF15458
NTR2 178-320 aa
PF07842
GCFC 641-842 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810117.1 |
Pfam | PF15458 |
NTR2 | Family | 178 | 320 | 1.3e-07 | 32.2 | Nineteen complex-related protein 2 |
XP_057810117.1 |
Pfam | PF07842 |
GCFC | Family | 641 | 842 | 2.2e-18 | 67.6 | GC-rich sequence DNA-binding factor-like protein |
XP_057810118.1 |
Pfam | PF15458 |
NTR2 | Family | 178 | 320 | 1.3e-07 | 32.2 | Nineteen complex-related protein 2 |
XP_057810118.1 |
Pfam | PF07842 |
GCFC | Family | 641 | 842 | 2.2e-18 | 67.6 | GC-rich sequence DNA-binding factor-like protein |
XP_057810119.1 |
Pfam | PF15458 |
NTR2 | Family | 178 | 320 | 1.3e-07 | 32.2 | Nineteen complex-related protein 2 |
XP_057810119.1 |
Pfam | PF07842 |
GCFC | Family | 641 | 842 | 2.2e-18 | 67.6 | GC-rich sequence DNA-binding factor-like protein |
XP_057810120.1 |
Pfam | PF15458 |
NTR2 | Family | 178 | 320 | 1.3e-07 | 32.2 | Nineteen complex-related protein 2 |
XP_057810120.1 |
Pfam | PF07842 |
GCFC | Family | 641 | 842 | 2.2e-18 | 67.6 | GC-rich sequence DNA-binding factor-like protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。