Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G003354

染色体: Chr05 坐标: 44289644-44298765 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G003354
名称SmilChr05G003354
描述uncharacterized SmilChr05G003354
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向44289644 - 44298765 / -

ID 对照

NCBI Gene IDLOC131024692
GeneID131024692
locus_tag-
NCBI NameLOC131024692
原始查询LOC131024692

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述confidence=no_hit
产物confidence=no_hit
Arabidopsis-
-
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131024692

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057810199.1
2 Chromosome 染色体 0.80000 XP_057810199.1
3 Nucleoplasm 核质 0.60000 XP_057810199.1
4 Nuclear body 核内小体 0.40000 XP_057810199.1
5 Centromere 着丝粒 0.00000 XP_057810199.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:44290016 C T EMS_canonical_SNV CDS_variant 2 C15,C50
Chr5:44290170 G A EMS_canonical_SNV CDS_variant 1 B2
Chr5:44290183 C T EMS_canonical_SNV CDS_variant 1 B47
Chr5:44290198 C T EMS_canonical_SNV CDS_variant 2 B47,C68
Chr5:44290200 G A EMS_canonical_SNV CDS_variant 2 A14,A21
Chr5:44290228 G A EMS_canonical_SNV stop_gained 7 A20,B137,B33,B35,B41,C36,C82
Chr5:44290257 C T EMS_canonical_SNV stop_gained 19 A19,B106,B109,B118,B126,B13,B20,B30,B35,B7,B76,B78,B86,B90,C25,C34,C41,C60,D2
Chr5:44290259 C T EMS_canonical_SNV stop_gained 45 A15,A16,A24,A7,B100,B102,B105,B112,B113,B114,B12,B125,B136,B139,B26,B3,B36,B38,B39,B4,B42,B43,B61,B63,B70,B71,B72,B77,B81,B82,B9,B97,C14,C20,C30,C33,C39,C40,C42,C52,C56,C62,C63,C82,C83
Chr5:44290266 G A EMS_canonical_SNV CDS_variant 1 B21
Chr5:44290267 G A EMS_canonical_SNV CDS_variant 2 C21,C5
Chr5:44290276 G A EMS_canonical_SNV CDS_variant 1 B21
Chr5:44290277 G A EMS_canonical_SNV CDS_variant 1 C5

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057954218.1
TTGGGGGAAAATCATCAAAAAACACCACGAAATCTTTCGAGGCTTAGGGCGCCAAAACCTCATAAATTATTTCCTATCGCTCAATTAACCAAATTCACTCTTTCTCTGTCTTCTTCGCCGATTCAAGTTCAGTGCTACTGCAAGTCAGAGATTTAGCTACCAGGAAATCATTCAGTTGCAAACACACCTTCGCCATTTCTGCAAGCTTGCCAGAATCATAAGCCCTCGCCTCCGTTACACTGTTTCACACAAAAGAAATA...
XM_057954217.1
TTGGGGGAAAATCATCAAAAAACACCACGAAATCTTTCGAGGCTTAGGGCGCCAAAACCTCATAAATTATTTCCTATCGCTCAATTAACCAAATTCACTCTTTCTCTGTCTTCTTCGCCGATTCAAGTTCAGTGCTACTGCAAGTCAGAGATTTAGCTACCAGGAAATCATTCAGTTGCAAACACACCTTCGCCATTTCTGCAAGCTTGCCAGAATCATAAGCCCTCGCCTCCGTTACACTGTTTCACACAAAAGAAATA...

CDS

5 records

下载 CDS FASTA
LOC131024692
ATGGAGCCGATGATTGATCCGAGCTCATCAATTCCGGAACTAATCAAATTTATTAAGCACTCATTTCGCGAGTGCGAGTTTGATGAGGTGCAGAATACATTGATGGAGCGGGAAAAAAGTATGAAAGTTGAAATGGAAAAGCTTGTCAGAGAATGTGATGAACTGAAGAAACAGGTTGATTTCCTGGAGCGCTCTAAGGGCTATTCGGAGTTGGAGAAATGTGATCTGGAGGAGAAGCTGAGAGAGAGTCAGAAGAAAGG...
LOC131024692
ATGGAGCCGATGATTGATCCGAGCTCATCAATTCCGGAACTAATCAAATTTATTAAGCACTCATTTCGCGAGTGCGAGTTTGATGAGGTGCAGAATACATTGATGGAGCGGGAAAAAAGTATGAAAGTTGAAATGGAAAAGCTTGTCAGAGAATGTGATGAACTGAAGAAACAGGTTGATTTCCTGGAGCGCTCTAAGGGCTATTCGGAGTTGGAGAAATGTGATCTGGAGGAGAAGCTGAGAGAGAGTCAGAAGAAAGG...

Protein

5 records

下载 Protein FASTA
XP_057810199.1
MEPMIDPSSSIPELIKFIKHSFRECEFDEVQNTLMEREKSMKVEMEKLVRECDELKKQVDFLERSKGYSELEKCDLEEKLRESQKKGEELDKMIVQTNEKFEKLRSEKHDVENELVRSIGKCEEMDERLAKMGKEIEELRRESLYANKTIEELKAKEIEADRVVQELKRQNNEAAAAIDTELEKNMQNGEVNPEEDRATESPEFPAISGSHASVMQSGGEAPAEKAVASSFAAGKVVIVICDSDSDGETHIPDTLSGQTK...
XP_057810200.1
MEPMIDPSSSIPELIKFIKHSFRECEFDEVQNTLMEREKSMKVEMEKLVRECDELKKQVDFLERSKGYSELEKCDLEEKLRESQKKGEELDKMIVQTNEKFEKLRSEKHDVENELVRSIGKCEEMDERLAKMGKEIEELRRESLYANKTIEELKAKEIEADRVVQELKRQNNEAAAAIDTELEKNMQNGEVNPEEDRATESPEFPAISGSHASVMQSGGEAPAEKAVASSFAAGKVVIVICDSDSDGETHIPDTLSGQTK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器