Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003363`

染色体: Chr05 坐标: 44433085-44439251 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003363`
名称	SmilChr05G003363
描述	uncharacterized SmilChr05G003363
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	44433085 - 44439251 / `-`

ID 对照

NCBI Gene ID	`LOC131024697`
GeneID	`131024697`
locus_tag	`-`
NCBI Name	`LOC131024697`
原始查询	`LOC131024697`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=weak
产物	K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000]; symbol=AT1G31150; hit=AT1G31150; species=arabidopsis; confidence=weak
Arabidopsis	`AT1G31150` (AT1G31150) K-box region protein (DUF1985) [Source:NCBI gene (formerly Entrezgene);Acc:840000] identity=23.2; qcov=0.338; evalue=6.56e-10; confidence=weak
Rice	`-` -
GO	-
KEGG	-
Pfam	PF09331 (DUF1985); PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:131024697

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057810211.1`
2	Chromosome	染色体	0.00000	`XP_057810211.1`
3	Centromere	着丝粒	0.00000	`XP_057810211.1`
4	Chromatin	染色质	0.00000	`XP_057810211.1`
5	Telomere	端粒	0.00000	`XP_057810211.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:44433337`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C24,C3
`Chr5:44433371`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B19,B23,D5
`Chr5:44433408`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C87
`Chr5:44433408`	`GA`	`G`	1bp_deletion	CDS_variant	1	C87
`Chr5:44433431`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B134,B138,C3,C8
`Chr5:44433483`	`TG`	`T`	1bp_deletion	frameshift_variant	137	A1,A16,A18,A23,A25,A4,A6,A7,A8,A9,B1,B10,B100,B101,B102,B103,B104,B106,B108,B113,B12,B120,B122,B124,B125,B129,B134,B138,B14,B140,B16,B17,B18,B2,B20,B21,B24,B25,B3,B30,B33,B34,B35,B36,B37,B38,B39,B41,B44,B49,B5,B50,B51,B52,B55,B58,B59,B6,B60,B63,B64,B65,B66,B68,B69,B7,B72,B74,B76,B79,B8,B80,B82,B83,B85,B86,B9,B90,B92,B93,B94,B97,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C20,C21,C23,C27,C29,C3,C32,C34,C35,C36,C37,C39,C41,C42,C43,C44,C46,C47,C48,C52,C55,C57,C58,C59,C63,C68,C69,C7,C70,C73,C74,C75,C76,C79,C8,C81,C83,C84,C87,D1,D10,D3,D6
`Chr5:44433567`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	B15,B94
`Chr5:44433567`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,B94
`Chr5:44433614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B114,B45
`Chr5:44433663`	`C`	`CTG`	2bp_insertion	frameshift_variant	2	B126,D11
`Chr5:44433663`	`C`	`CTG`	2bp_insertion	CDS_variant	2	B126,D11
`Chr5:44433672`	`T`	`TG`	1bp_insertion	frameshift_variant	3	B105,B88,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810211.1

840 aa

420

840

DUF8566

DUF1985

PF29561 DUF8566 392-581 aa PF09331 DUF1985 427-554 aa

XP_057810212.1

839 aa

420

839

DUF8566

DUF1985

PF29561 DUF8566 391-580 aa PF09331 DUF1985 426-553 aa

XP_057810213.1

837 aa

418

837

DUF8566

DUF1985

PF29561 DUF8566 389-578 aa PF09331 DUF1985 424-551 aa

XP_057810214.1

817 aa

408

817

DUF8566

DUF1985

PF29561 DUF8566 369-558 aa PF09331 DUF1985 404-531 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810211.1`	Pfam	`PF29561`	DUF8566	Domain	392	581	8.2e-11	42.8	Domain of unknown function (DUF8566)
`XP_057810211.1`	Pfam	`PF09331`	DUF1985	Family	427	554	6.4e-13	49.6	Domain of unknown function (DUF1985)
`XP_057810212.1`	Pfam	`PF29561`	DUF8566	Domain	391	580	8.2e-11	42.8	Domain of unknown function (DUF8566)
`XP_057810212.1`	Pfam	`PF09331`	DUF1985	Family	426	553	6.4e-13	49.6	Domain of unknown function (DUF1985)
`XP_057810213.1`	Pfam	`PF29561`	DUF8566	Domain	389	578	8.1e-11	42.8	Domain of unknown function (DUF8566)
`XP_057810213.1`	Pfam	`PF09331`	DUF1985	Family	424	551	6.3e-13	49.6	Domain of unknown function (DUF1985)
`XP_057810214.1`	Pfam	`PF29561`	DUF8566	Domain	369	558	7.8e-11	42.9	Domain of unknown function (DUF8566)
`XP_057810214.1`	Pfam	`PF09331`	DUF1985	Family	404	531	6e-13	49.7	Domain of unknown function (DUF1985)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057954231.1
CCAAGTTTGTGTCATTCCAGCTTCGCACTCCTCAGACTCCATCCTCTCTCTCTCTCACATACGCGCGCGCAGAGGCCGGAGTGCGCAGCAGAGTTTAAATATAGTCGCAAGCACACCTTCGCCATTTCTGCAAGCTTGCGAGAATCATAAGCCCTCGCCTCCGTTACACTGTTTCACACAAAAGAAATATCTCCACAAGAAACCCTCCAATTTCGCACGTGATTACGACATACATTACTCAGGGAGCCGATGATTGATCC...

XM_057954230.1
CCAAGTTTGTGTCATTCCAGCTTCGCACTCCTCAGACTCCATCCTCTCTCTCTCTCACATACGCGCGCGCAGAGGCCGGAGTGCGCAGCAGAGTTTAAATATAGTCGCAAGCACACCTTCGCCATTTCTGCAAGCTTGCGAGAATCATAAGCCCTCGCCTCCGTTACACTGTTTCACACAAAAGAAATATCTCCACAAGAAACCCTCCAATTTCGCACGTGATTACGACATACATTACTCAGGGAGCCGATGATTGATCC...

CDS

4 records

下载 CDS FASTA

LOC131024697
ATGATTGATCCGAGCTCATCAATTCCGGAACTAATCAAATTTATTAAGCACTCATTTCGCAAATGCGAGTTTGATGAGGTGCAGAATACATTGATGGAGCGGGAAAAAAGTATGAAAGTTGAAATGGAAAAGCTTGTCAGAGATTGTGATGAACTGAAGAAACAGGTTGATTTCCTGGAGCGCTGTTTGGGCTATTCGGAGTTGGAGAAGTGTGATCTGGAGGAGAAGCTGAGAGAGAGTCAGAAGAGAGGTGACGAGTT...

Protein

4 records

下载 Protein FASTA

XP_057810211.1
MIDPSSSIPELIKFIKHSFRKCEFDEVQNTLMEREKSMKVEMEKLVRDCDELKKQVDFLERCLGYSELEKCDLEEKLRESQKRGDELDKMLVQTNEKFEKLRREKHDVENELVRSIGKYEEMDERLIKMGKEIEELRRESLSANKTIEELKAKEIEADRVAQELKRQNNETAPTDTELEKNMQNGEVNPEEDRATESPEFPAISGSHLSVMQSGGEVPAEKTVASSSAAGKVVIVICDSDSNDETRIPDTSSWQTKGRKI...

XP_057810212.1
MIDPSSSIPELIKFIKHSFRKCEFDEVQNTLMEREKSMKVEMEKLVRDCDELKKQVDFLERCLGYSELEKCDLEEKLRESQKRGDELDKMLVQTNEKFEKLRREKHDVENELVRSIGKYEEMDERLIKMGKEIEELRRESLSANKTIEELKAKEIEADRVAQELKRQNNETAPTDTELEKNMQNGEVNPEEDRATESPEFPAISGSHLSVMQSGGEVPAEKTVASSSAAGKVVIVICDSDSNDETRIPDTSSWQTKGRKI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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