Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002406

染色体: Chr05 坐标: 26563827-26575030 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002406
名称SmilChr05G002406
描述kinesin-like protein KIN-12E
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向26563827 - 26575030 / +

ID 对照

NCBI Gene IDLOC131024702
GeneID131024702
locus_tag-
NCBI NameLOC131024702
原始查询LOC131024702

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述kinesin-like protein KIN-12E
产物kinesin-like protein KIN-12E
ArabidopsisAT3G17360 (POK1)
phragmoplast orienting kinesin 1 [Source:NCBI gene (formerly Entrezgene);Acc:820999]
identity=53; qcov=0.54; evalue=0; confidence=medium
RiceOs12g0590500
-
identity=45.1; qcov=0.511; evalue=0; confidence=medium
GOGO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding)
KEGGsmil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage))
PfamPF00225 (Kinesin); PF16796 (Microtub_bd)
InterPro-
eggNOG-
NRGeneID:131024702

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoskeleton 细胞骨架 1.00000 XP_057810222.1
2 Spindle Spindle 0.80000 XP_057810222.1
3 Phragmoplast Phragmoplast 0.60000 XP_057810222.1
4 Spindle pole Spindle pole 0.60000 XP_057810222.1
5 Chromosome 染色体 0.20000 XP_057810222.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:26564036 C T EMS_canonical_SNV CDS_variant 2 B131,D10
Chr5:26564150 C T EMS_canonical_SNV CDS_variant 1 B131
Chr5:26565200 G A EMS_canonical_SNV CDS_variant 2 B74,B77
Chr5:26565253 C T EMS_canonical_SNV CDS_variant 1 C68
Chr5:26565833 G A EMS_canonical_SNV CDS_variant 4 B117,B128,B46,C39
Chr5:26567419 G A EMS_canonical_SNV CDS_variant 1 B102
Chr5:26567700 C T EMS_canonical_SNV CDS_variant 1 B97
Chr5:26567957 G A EMS_canonical_SNV CDS_variant 2 B52,C29
Chr5:26568163 G A EMS_canonical_SNV CDS_variant 5 A25,B95,C10,C63,C73
Chr5:26568278 C T EMS_canonical_SNV CDS_variant 2 B106,B139
Chr5:26568933 G A EMS_canonical_SNV CDS_variant 1 D10
Chr5:26569371 G A EMS_canonical_SNV CDS_variant 2 C83,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057810222.1
2020 aa
N
1
1010
2020
Kinesin
Microtub_bd
C
PF00225 Kinesin 174-505 aa PF16796 Microtub_bd 198-320 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057810222.1 Pfam PF00225 Kinesin Domain 174 505 8.8e-112 374.0 Kinesin motor domain
XP_057810222.1 Pfam PF16796 Microtub_bd Domain 198 320 5.8e-20 72.5 Microtubule binding

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057954239.1
TTAAATTTGTTATCCGTTCATTCACCTTCAGCTTCAATCAAAGCTCACACCTTTCTCACCATAATTTTCTTCCAATTCCCCAAAATATCATCAATCAATGCGTCAACTTTAACACTTCATTAATTTCCAATCTCTTACAAAGTTTTTCCGCTACAAATCACACCTCCAGCAATGTCGCCGATTCGCCGGAGAACGGCGCAGTCGGCCGGCGACGAGAATGAATTCGAGAGCATATGGAATCAGACGATGCTCGTTCCATC...

CDS

1 records

下载 CDS FASTA
LOC131024702
ATGTCGCCGATTCGCCGGAGAACGGCGCAGTCGGCCGGCGACGAGAATGAATTCGAGAGCATATGGAATCAGACGATGCTCGTTCCATCAAGACCTCCGCTCAACTCGATTCCTGACCCATCCCAATACCAATCGCAACTATCTCAGCTCCACTTTGAAGAGAAGCCCGAGTCGTCTCGTAGGAGAAAACATGAGGGAGTGGGAGAAAGGCAGGTCATTTCGGCTTTTATGAGAACTCCAAAGGCTAATGGCAGAGCTAA...

Protein

1 records

下载 Protein FASTA
XP_057810222.1
MSPIRRRTAQSAGDENEFESIWNQTMLVPSRPPLNSIPDPSQYQSQLSQLHFEEKPESSRRRKHEGVGERQVISAFMRTPKANGRAKPASSEPNSAQSTPARSGHRVSFAGSTLTRLPSQFSNGGGRAGLLHRDSNSRRFSIATPQQLLADVPHFELDDDPSFWNDHNVQVLIRMRPLNSSEMVSQGYGRCLRQESPHTVVWQGHPETRFTFDHIACESISQEKLFKVAGLPMVDNCMSGYNSCMFAYGQTGSGKTYTMM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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