Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr05G002404

染色体: Chr05 坐标: 26546642-26553014 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr05G002404
名称SmilChr05G002404
描述probable inactive DNA (cytosine-5)-methyltransferase DRM3
染色体 / SeqIDChr05 / NC_080391.1
坐标与链方向26546642 - 26553014 / +

ID 对照

NCBI Gene IDLOC131024704
GeneID131024704
locus_tag-
NCBI NameLOC131024704
原始查询LOC131024704

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述probable inactive DNA (cytosine-5)-methyltransferase DRM3
产物probable inactive DNA (cytosine-5)-methyltransferase DRM3
ArabidopsisAT3G17310 (DRM3)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820994]
identity=38.5; qcov=1.03; evalue=3.21e-161; confidence=medium
RiceOs05g0133900 (OsDRM3)
-
identity=38.1; qcov=0.963; evalue=5.31e-151; confidence=medium
GOGO:0005634 (nucleus); GO:0006306 (GO:0006306)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131024704

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057810224.1
2 Chromosome 染色体 0.00000 XP_057810224.1
3 Centromere 着丝粒 0.00000 XP_057810224.1
4 Chromatin 染色质 0.00000 XP_057810224.1
5 Telomere 端粒 0.00000 XP_057810224.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr5:26547835 G A EMS_canonical_SNV CDS_variant 5 A20,B84,C17,C47,C60
Chr5:26548919 CG C 1bp_deletion frameshift_variant 1 B49
Chr5:26548919 CG C 1bp_deletion CDS_variant 1 B49
Chr5:26548925 C T EMS_canonical_SNV CDS_variant 1 B75
Chr5:26550550 C T EMS_canonical_SNV CDS_variant 4 A4,B72,B79,C25
Chr5:26550571 G A EMS_canonical_SNV CDS_variant 3 A4,B72,C25
Chr5:26550594 C T EMS_canonical_SNV CDS_variant 4 B107,B136,B58,C28
Chr5:26550616 C T EMS_canonical_SNV CDS_variant 1 A4
Chr5:26551655 C T EMS_canonical_SNV CDS_variant 2 A18,B77
Chr5:26552078 C T EMS_canonical_SNV CDS_variant 1 C77
Chr5:26552255 C T EMS_canonical_SNV CDS_variant 5 B107,B136,B45,B58,C28
Chr5:26552455 C T EMS_canonical_SNV stop_gained 49 A1,A10,A11,A4,A9,B100,B102,B111,B12,B121,B122,B138,B140,B15,B16,B18,B29,B32,B34,B35,B37,B38,B50,B51,B54,B55,B67,B71,B78,B85,B86,B93,B94,C13,C17,C24,C25,C31,C34,C35,C37,C46,C52,C62,C77,C81,C85,D1,D3

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057954242.1
AAAACTTTGAACTGATTTCAAGAAGTACTAGTTTATATTTCGCAGCGACTCTTCACGCGCCGCTATCTGCCGCCGTGAGTATTTTACGCTTCTAACCCTGGTTCCTTGTGGTTCTGTCTGAGCAAATCAAGGAGGACAAAAGCAATGGTTTTTATCATCATCTGTACTACTTTTTGATGATTTATTTGCATGCACTCGGAATGCGGCTCAGTTTATTAGCCTTTCAAAAAAAATTGTACCTTTGTTGTGCGGTTTCGTGT...
XM_057954241.1
GATTTCAAGAAGTACTAGTTTATATTTCGCAGCGACTCTTCACGCGCCGCTATCTGCCGCCGTGAGTATTTTACGCTTCTAACCCTGGTTCCTTGTGGTTCTGTCTGAGCAAATCAAGGAGGACAAAAGCAATGGTTTTTATCATCATCTGTACTACTTTTTGATGATTTATTTGCATGCACTCGGAATGCGGCTCAGTTTATTAGCCTTTCAAAAAAAATTGTACCTTTGTTGTGCGGTTTCGTGTTCAATTGCCTGCA...

CDS

2 records

下载 CDS FASTA
LOC131024704
ATGTGTGATGTAGTGGACATTTCAGATGATGAGGATTCCTTTTTGCTGGAAAATGATGCTGGAGTTATACCCAAGGATGAGAATTTGGATTATGATTTACCACCGCCGAAAACATTCTCAATGCCAAGGGAGGAGGATGGCGCAAGCTCGTCGGGGACTAATTTAAGATCATCGTTCATTGGAATGGGGTTTGCACCAGCTCTCGTCGACAAAGCAATCAAGGAAAAGGGTGAAGAAAACAGCGAACTGATACTGGAAGC...
LOC131024704
ATGTGTGATGTAGTGGACATTTCAGATGATGAGGATTCCTTTTTGCTGGAAAATGATGCTGGAGTTATACCCAAGGATGAGAATTTGGATTATGATTTACCACCGCCGAAAACATTCTCAATGCCAAGGGAGGAGGATGGCGCAAGCTCGTCGGGGACTAATTTAAGATCATCGTTCATTGGAATGGGGTTTGCACCAGCTCTCGTCGACAAAGCAATCAAGGAAAAGGGTGAAGAAAACAGCGAACTGATACTGGAAGC...

Protein

2 records

下载 Protein FASTA
XP_057810224.1
MCDVVDISDDEDSFLLENDAGVIPKDENLDYDLPPPKTFSMPREEDGASSSGTNLRSSFIGMGFAPALVDKAIKEKGEENSELILEALFSYDALQKPKNEVLDNSFSGECSDSLAGNLRAGEDFHKSESSDSLGRLFAEGTKKNVYVEADIPLKVELDVGDSVIDEKTASLLKMNFSLDEVGFAMQRLGKNAAIGQLMDFIFAARMARKYEKDTNNSIPGNEETEKDCNNEVLFGIMEKSLQLLEMGFTENEISAAFERC...
XP_057810225.1
MCDVVDISDDEDSFLLENDAGVIPKDENLDYDLPPPKTFSMPREEDGASSSGTNLRSSFIGMGFAPALVDKAIKEKGEENSELILEALFSYDALQKPKNEVLDNSFSGECSDSLAGNLRAGEDFHKSESSDSLGRLFAEGTKKNVYVEADIPLKVELDVGDSVIDEKTASLLKMNFSLDEVGFAMQRLGKNAAIGQLMDFIFAARMARKYEKDTNNSIPGNEETEKDCNNEVLFGIMEKSLQLLEMGFTENEISAAFERC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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