当前解析结果
SmilChr05G002404| 统一新 Gene ID | SmilChr05G002404 |
|---|---|
| 名称 | SmilChr05G002404 |
| 描述 | probable inactive DNA (cytosine-5)-methyltransferase DRM3 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 26546642 - 26553014 / + |
| NCBI Gene ID | LOC131024704 |
|---|---|
| GeneID | 131024704 |
| locus_tag | - |
| NCBI Name | LOC131024704 |
| 原始查询 | LOC131024704 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inactive DNA (cytosine-5)-methyltransferase DRM3 |
| 产物 | probable inactive DNA (cytosine-5)-methyltransferase DRM3 |
| Arabidopsis | AT3G17310 (DRM3)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820994] identity=38.5; qcov=1.03; evalue=3.21e-161; confidence=medium |
| Rice | Os05g0133900 (OsDRM3)- identity=38.1; qcov=0.963; evalue=5.31e-151; confidence=medium |
| GO | GO:0005634 (nucleus); GO:0006306 (GO:0006306) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024704 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057810224.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057810224.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057810224.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057810224.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057810224.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:26547835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B84,C17,C47,C60 |
Chr5:26548919 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | B49 |
Chr5:26548919 |
CG |
C |
1bp_deletion | CDS_variant | 1 | B49 |
Chr5:26548925 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr5:26550550 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B72,B79,C25 |
Chr5:26550571 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B72,C25 |
Chr5:26550594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B136,B58,C28 |
Chr5:26550616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr5:26551655 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B77 |
Chr5:26552078 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr5:26552255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B136,B45,B58,C28 |
Chr5:26552455 |
C |
T |
EMS_canonical_SNV | stop_gained | 49 | A1,A10,A11,A4,A9,B100,B102,B111,B12,B121,B122,B138,B140,B15,B16,B18,B29,B32,B34,B35,B37,B38,B50,B51,B54,B55,B67,B71,B78,B85,B86,B93,B94,C13,C17,C24,C25,C31,C34,C35,C37,C46,C52,C62,C77,C81,C85,D1,D3 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。