当前解析结果
SmilChr05G000168| 统一新 Gene ID | SmilChr05G000168 |
|---|---|
| 名称 | SmilChr05G000168 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1331913 - 1334537 / + |
| NCBI Gene ID | LOC131024743 |
|---|---|
| GeneID | 131024743 |
| locus_tag | - |
| NCBI Name | LOC131024743 |
| 原始查询 | LOC131024743 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT1G59780 (AT1G59780)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:842271] identity=24.8; qcov=0.95; evalue=4.16e-36; confidence=weak |
| Rice | Os08g0424700 (P0456B03.103)- identity=26.8; qcov=0.841; evalue=7.5e-37; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024743 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057810264.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057810264.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057810264.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057810264.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057810264.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1331931 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A3,B44,B53,B89,D4 |
Chr5:1331959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B87,C44,C61 |
Chr5:1331977 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C19,C8 |
Chr5:1332015 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,D4 |
Chr5:1332018 |
G |
GT |
1bp_insertion | frameshift_variant | 3 | A19,B108,D9 |
Chr5:1332018 |
G |
GT |
1bp_insertion | CDS_variant | 3 | A19,B108,D9 |
Chr5:1332026 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B41,C19 |
Chr5:1332035 |
T |
TTA |
2bp_insertion | frameshift_variant | 71 | A10,A15,A23,A4,A5,A8,B104,B11,B113,B119,B12,B121,B13,B130,B133,B135,B16,B2,B28,B36,B41,B44,B46,B47,B48,B5,B50,B52,B56,B60,B64,B65,B71,B74,B75,B77,B78,B85,B86,B89,B96,B98,C15,C16,C22,C3,C34,C38,C40,C41,C42,C46,C47,C49,C50,C55,C56,C59,C6,C64,C66,C7,C70,C73,C76,C78,C79,C8,C85,C87,D9 |
Chr5:1332036 |
CGA |
C |
2bp_deletion | frameshift_variant | 68 | A10,A15,A23,A4,A5,B104,B11,B113,B119,B12,B121,B13,B130,B133,B135,B16,B2,B28,B36,B41,B44,B46,B47,B48,B5,B50,B52,B56,B60,B64,B71,B74,B77,B78,B85,B86,B89,B96,B98,C15,C16,C22,C3,C34,C38,C40,C41,C42,C46,C47,C49,C50,C55,C56,C59,C6,C64,C66,C7,C70,C73,C76,C78,C79,C8,C85,C87,D9 |
Chr5:1332055 |
TCA |
T |
2bp_deletion | frameshift_variant | 8 | B26,B85,B89,C1,C30,C52,C62,D9 |
Chr5:1332058 |
A |
AGG |
2bp_insertion | frameshift_variant | 8 | B26,B85,B89,C1,C30,C52,C62,D9 |
Chr5:1332062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810264.1PF00931
NB-ARC 160-328 aa
PF23598
LRR_14 556-825 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810264.1 |
Pfam | PF00931 |
NB-ARC | Domain | 160 | 328 | 4.8e-28 | 98.6 | NB-ARC domain |
XP_057810264.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 556 | 825 | 1.9e-13 | 50.6 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。