当前解析结果
SmilChr05G000182| 统一新 Gene ID | SmilChr05G000182 |
|---|---|
| 名称 | SmilChr05G000182 |
| 描述 | probable complex I intermediate-associated protein 30 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 1449905 - 1453013 / + |
| NCBI Gene ID | LOC131024744 |
|---|---|
| GeneID | 131024744 |
| locus_tag | - |
| NCBI Name | LOC131024744 |
| 原始查询 | LOC131024744 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable complex I intermediate-associated protein 30 |
| 产物 | probable complex I intermediate-associated protein 30 |
| Arabidopsis | AT1G72420 (AT1G72420)NADH:ubiquinone oxidoreductase intermediate-associated protein 30 [Source:NCBI gene (formerly Entrezgene);Acc:843574] identity=58.5; qcov=0.981; evalue=1.33e-55; confidence=high |
| Rice | Os01g0727400- identity=61.1; qcov=0.961; evalue=8.4e-57; confidence=high |
| GO | GO:0005739 (mitochondrion); GO:0006120 (mitochondrial electron transport, NADH to ubiquinone); GO:0032981 (mitochondrial respiratory chain complex I assembly); GO:0051082 (GO:0051082) |
| KEGG | - |
| Pfam | PF08547 (CIA30) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024744 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057810267.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.80000 | XP_057810267.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.20000 | XP_057810267.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057810267.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057810267.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:1451634 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B50,B69 |
Chr5:1451646 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B103,B22,B47,C39 |
Chr5:1451650 |
CGG |
C |
2bp_deletion | frameshift_variant | 12 | B110,B120,B21,B3,B44,B59,B88,C11,C58,C69,C72,D6 |
Chr5:1451661 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,B77 |
Chr5:1451669 |
T |
TG |
1bp_insertion | frameshift_variant | 1 | B66 |
Chr5:1451669 |
T |
TG |
1bp_insertion | CDS_variant | 1 | B66 |
Chr5:1451675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr5:1451690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,B8 |
Chr5:1451718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057810267.1PF08547
CIA30 35-151 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810267.1 |
Pfam | PF08547 |
CIA30 | Family | 35 | 151 | 1.8e-15 | 58.0 | Complex I intermediate-associated protein 30 (CIA30) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。