当前解析结果
SmilChr01G002359| 统一新 Gene ID | SmilChr01G002359 |
|---|---|
| 名称 | SmilChr01G002359 |
| 描述 | transcription factor MAMYB |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 40761141 - 40763492 / + |
| NCBI Gene ID | LOC131024747 |
|---|---|
| GeneID | 131024747 |
| locus_tag | - |
| NCBI Name | LOC131024747 |
| 原始查询 | LOC131024747 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MAMYB |
| 产物 | transcription factor MAMYB |
| Arabidopsis | AT5G45420 (maMYB)Duplicated homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834578] identity=46.7; qcov=1.04; evalue=8.04e-62; confidence=high |
| Rice | Os08g0159000 (P0498E12.114)- identity=33.2; qcov=1.07; evalue=1.29e-36; confidence=low |
| GO | GO:0005829 (cytosol); GO:0006450 (regulation of translational fidelity); GO:0030544 (Hsp70 protein binding); GO:0043022 (ribosome binding); GO:0051083 ('de novo' cotranslational protein folding) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF23082 (Myb_DNA-binding_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024747 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057810271.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.60000 | XP_057810271.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057810271.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057810271.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057810271.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:40761287 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:40761315 |
TTC |
T |
2bp_deletion | frameshift_variant | 1 | C21 |
Chr1:40761315 |
TTC |
T |
2bp_deletion | CDS_variant | 1 | C21 |
Chr1:40761344 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,C61,D7 |
Chr1:40761413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr1:40761421 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B36,B93,C29,C51 |
Chr1:40761457 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B131,C6 |
Chr1:40761467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A24,B103,C9 |
Chr1:40761489 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,C78 |
Chr1:40761580 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C1,C17 |
Chr1:40761631 |
TC |
T |
1bp_deletion | frameshift_variant | 69 | A10,A11,A2,A24,A3,A5,A7,B108,B117,B124,B126,B131,B135,B140,B20,B24,B27,B33,B34,B36,B39,B5,B53,B56,B57,B6,B64,B68,B7,B71,B72,B79,B9,B91,B93,B96,B99,C14,C18,C19,C21,C22,C23,C26,C29,C30,C33,C34,C36,C41,C42,C48,C52,C54,C56,C58,C6,C60,C61,C63,C66,C67,C74,C82,C83,C87,D5,D6,D7 |
Chr1:40761649 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B131 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810271.1PF23082
Myb_DNA-binding_2 160-228 aa
PF00249
Myb_DNA-binding 243-284 aa
XP_057810278.1PF23082
Myb_DNA-binding_2 160-228 aa
PF00249
Myb_DNA-binding 243-284 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810271.1 |
Pfam | PF23082 |
Myb_DNA-binding_2 | Domain | 160 | 228 | 7.8e-37 | 125.9 | Myb-like DNA-binding domain |
XP_057810271.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 243 | 284 | 4.5e-10 | 40.2 | Myb-like DNA-binding domain |
XP_057810278.1 |
Pfam | PF23082 |
Myb_DNA-binding_2 | Domain | 160 | 228 | 7.8e-37 | 125.9 | Myb-like DNA-binding domain |
XP_057810278.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 243 | 284 | 4.5e-10 | 40.2 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。