当前解析结果
SmilChr05G000335| 统一新 Gene ID | SmilChr05G000335 |
|---|---|
| 名称 | SmilChr05G000335 |
| 描述 | uncharacterized SmilChr05G000335 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 2496943 - 2497439 / - |
| NCBI Gene ID | LOC131024775 |
|---|---|
| GeneID | 131024775 |
| locus_tag | - |
| NCBI Name | LOC131024775 |
| 原始查询 | LOC131024775 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | exosome complex exonuclease [Source:NCBI gene (formerly Entrezgene);Acc:832625]; symbol=AT5G25500; hit=AT5G25500; species=arabidopsis; confidence=medium |
| 产物 | exosome complex exonuclease [Source:NCBI gene (formerly Entrezgene);Acc:832625]; symbol=AT5G25500; hit=AT5G25500; species=arabidopsis; confidence=medium |
| Arabidopsis | AT5G25500 (AT5G25500)exosome complex exonuclease [Source:NCBI gene (formerly Entrezgene);Acc:832625] identity=40.6; qcov=1.21; evalue=9.01e-35; confidence=medium |
| Rice | Os11g0207300- identity=30.8; qcov=1.37; evalue=1.55e-21; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024775 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057810297.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057810297.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057810297.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057810297.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057810297.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:2496973 |
A |
ATT |
2bp_insertion | frameshift_variant | 5 | B111,B127,B136,C12,C18 |
Chr5:2496973 |
A |
ATT |
2bp_insertion | CDS_variant | 5 | B111,B127,B136,C12,C18 |
Chr5:2497030 |
C |
CA |
1bp_insertion | frameshift_variant | 28 | A8,B10,B106,B107,B110,B124,B13,B2,B28,B42,B43,B49,B6,B60,B64,B68,C14,C30,C44,C52,C6,C60,C62,C63,C67,C7,C78,D11 |
Chr5:2497106 |
AC |
* |
1bp_deletion | CDS_variant | 3 | B38,B39,B82 |
Chr5:2497150 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,B131 |
Chr5:2497155 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B8,C83 |
Chr5:2497162 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B51,B88,B95,C57 |
Chr5:2497201 |
A |
ACG |
2bp_insertion | frameshift_variant | 28 | A14,A22,A24,B109,B119,B4,B49,B53,B56,B65,B67,B72,B74,B85,B96,C19,C22,C32,C34,C36,C39,C41,C50,C59,C61,C68,C71,D11 |
Chr5:2497204 |
C |
CCT |
2bp_insertion | frameshift_variant | 28 | A14,A22,A24,B109,B119,B4,B49,B53,B56,B65,B67,B72,B74,B85,B96,C19,C22,C32,C34,C36,C39,C41,C50,C59,C61,C68,C71,D11 |
Chr5:2497350 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B132,B82 |
Chr5:2497350 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B132,B82 |
Chr5:2497377 |
C |
CT |
1bp_insertion | frameshift_variant | 6 | B21,B22,B51,B91,C15,C73 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。