当前解析结果
SmilChr05G000354| 统一新 Gene ID | SmilChr05G000354 |
|---|---|
| 名称 | SmilChr05G000354 |
| 描述 | uncharacterized SmilChr05G000354 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 2640336 - 2643258 / - |
| NCBI Gene ID | LOC131024781 |
|---|---|
| GeneID | 131024781 |
| locus_tag | - |
| NCBI Name | LOC131024781 |
| 原始查询 | LOC131024781 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:6241265]; symbol=AT5G39471; hit=AT5G39471; species=arabidopsis; confidence=low |
| 产物 | Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:6241265]; symbol=AT5G39471; hit=AT5G39471; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G39471 (AT5G39471)Cysteine/Histidine-rich C1 domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:6241265] identity=28.7; qcov=0.846; evalue=6.64e-39; confidence=low |
| Rice | Os07g0611200- identity=28.5; qcov=0.275; evalue=2.86e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF03107 (C1_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024781 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057810302.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057810302.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057810302.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810302.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810302.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:2640528 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,B30 |
Chr5:2640534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B88,C57 |
Chr5:2640542 |
ATG |
A |
2bp_deletion | frameshift_variant | 6 | B125,B67,B76,B90,B99,C81 |
Chr5:2640547 |
C |
CTT |
2bp_insertion | frameshift_variant | 2 | B125,B90 |
Chr5:2640547 |
C |
CTT |
2bp_insertion | CDS_variant | 2 | B125,B90 |
Chr5:2640553 |
T |
TGA |
2bp_insertion | frameshift_variant | 3 | A7,B51,C77 |
Chr5:2640553 |
T |
TGA |
2bp_insertion | CDS_variant | 3 | A7,B51,C77 |
Chr5:2640554 |
C |
CAA |
2bp_insertion | frameshift_variant | 56 | A11,A13,A14,A21,A3,A6,A7,B104,B105,B109,B11,B115,B118,B119,B13,B137,B14,B3,B30,B32,B34,B40,B42,B43,B44,B48,B51,B52,B54,B63,B69,B71,B72,B73,B77,B93,B98,C1,C11,C14,C2,C21,C25,C27,C3,C33,C38,C4,C45,C50,C72,C76,C86,D11,D5,D7 |
Chr5:2640565 |
T |
TC |
1bp_insertion | frameshift_variant | 52 | A11,A13,A14,A21,A3,A6,A7,B104,B105,B109,B11,B115,B119,B13,B137,B14,B3,B30,B32,B40,B44,B48,B51,B52,B54,B63,B69,B71,B72,B73,B77,B93,B98,C1,C11,C14,C2,C21,C25,C27,C33,C38,C4,C45,C50,C72,C74,C76,C86,D11,D5,D7 |
Chr5:2640580 |
T |
TTC |
2bp_insertion | frameshift_variant | 1 | B104 |
Chr5:2640580 |
T |
TTC |
2bp_insertion | CDS_variant | 1 | B104 |
Chr5:2640589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810302.1PF03107
C1_2 128-174 aa
PF03107
C1_2 187-238 aa
PF03107
C1_2 304-360 aa
PF03107
C1_2 502-549 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810302.1 |
Pfam | PF03107 |
C1_2 | Domain | 128 | 174 | 1.7e-48 | 163.4 | C1 domain |
XP_057810302.1 |
Pfam | PF03107 |
C1_2 | Domain | 187 | 238 | 1.7e-48 | 163.4 | C1 domain |
XP_057810302.1 |
Pfam | PF03107 |
C1_2 | Domain | 304 | 360 | 1.7e-48 | 163.4 | C1 domain |
XP_057810302.1 |
Pfam | PF03107 |
C1_2 | Domain | 502 | 549 | 1.7e-48 | 163.4 | C1 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。