Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003370`

染色体: Chr05 坐标: 44589083-44594685 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003370`
名称	SmilChr05G003370
描述	leucine-rich repeat receptor protein kinase HPCA1-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	44589083 - 44594685 / `+`

ID 对照

NCBI Gene ID	`LOC131024815`
GeneID	`131024815`
locus_tag	`-`
NCBI Name	`LOC131024815`
原始查询	`LOC131024815`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	leucine-rich repeat receptor protein kinase HPCA1-like
产物	leucine-rich repeat receptor protein kinase HPCA1-like
Arabidopsis	`AT1G79620` (AT1G79620) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:844301] identity=54.4; qcov=0.959; evalue=0; confidence=high
Rice	`Os12g0210400` - identity=52.8; qcov=0.962; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131024815

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057810334.1`
2	Nucleus	细胞核	0.00000	`XP_057810334.1`
3	Chromosome	染色体	0.00000	`XP_057810334.1`
4	Centromere	着丝粒	0.00000	`XP_057810334.1`
5	Chromatin	染色质	0.00000	`XP_057810334.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:44590363`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B134,B138,C3,C8
`Chr5:44591056`	`GTT`	`G`	2bp_deletion	frameshift_variant	39	A1,A11,A18,A3,A7,B101,B108,B109,B120,B122,B128,B21,B33,B38,B39,B41,B55,B60,B63,B72,B75,B8,B82,B85,B86,B91,C1,C18,C28,C29,C37,C41,C43,C45,C53,C76,C82,D1,D5
`Chr5:44591060`	`C`	`CAG`	2bp_insertion	frameshift_variant	38	A1,A11,A18,A3,B101,B108,B109,B120,B122,B128,B21,B33,B38,B39,B41,B55,B60,B63,B72,B75,B8,B82,B85,B86,B91,C1,C18,C28,C29,C37,C41,C43,C45,C53,C76,C82,D1,D5
`Chr5:44591346`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B109,C53
`Chr5:44591860`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B134,B138,C3,C8
`Chr5:44591881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B128,B39
`Chr5:44592448`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr5:44592556`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B60,C59
`Chr5:44592574`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr5:44592967`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr5:44593185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B14,B26,C37
`Chr5:44593396`	`AG`	`A`	1bp_deletion	frameshift_variant	12	B123,B129,B23,B58,C23,C27,C41,C46,C7,C74,C79,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810334.1

960 aa

480

960

LRR_14

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF23598 LRR_14 82-169 aa PF00560 LRR_1 91-113 aa PF00560 LRR_1 115-137 aa PF00560 LRR_1 139-161 aa PF00560 LRR_1 219-238 aa PF00560 LRR_1 266-283 aa PF00069 Pkinase 637-905 aa PF07714 PK_Tyr_Ser-Thr 638-906 aa

XP_057810335.1

960 aa

480

960

LRR_14

LRR_1

Pkinase

PK_Tyr_Ser-Thr

XP_057810336.1

953 aa

476

953

LRR_14

LRR_1

Pkinase

PK_Tyr_Ser-Thr

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810334.1`	Pfam	`PF23598`	LRR_14	Repeat	82	169	1.2e-16	61.1	Leucine-rich repeat region
`XP_057810334.1`	Pfam	`PF00560`	LRR_1	Repeat	91	113	1.2e-19	66.9	Leucine Rich Repeat
`XP_057810334.1`	Pfam	`PF00560`	LRR_1	Repeat	115	137	1.2e-19	66.9	Leucine Rich Repeat
`XP_057810334.1`	Pfam	`PF00560`	LRR_1	Repeat	139	161	1.2e-19	66.9	Leucine Rich Repeat
`XP_057810334.1`	Pfam	`PF00560`	LRR_1	Repeat	219	238	1.2e-19	66.9	Leucine Rich Repeat
`XP_057810334.1`	Pfam	`PF00560`	LRR_1	Repeat	266	283	1.2e-19	66.9	Leucine Rich Repeat
`XP_057810334.1`	Pfam	`PF00069`	Pkinase	Domain	637	905	6e-45	154.4	Protein kinase domain
`XP_057810334.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	638	906	8.5e-47	160.3	Protein tyrosine and serine/threonine kinase
`XP_057810335.1`	Pfam	`PF23598`	LRR_14	Repeat	82	169	1.2e-16	61.1	Leucine-rich repeat region
`XP_057810335.1`	Pfam	`PF00560`	LRR_1	Repeat	91	113	1.2e-19	66.9	Leucine Rich Repeat
`XP_057810335.1`	Pfam	`PF00560`	LRR_1	Repeat	115	137	1.2e-19	66.9	Leucine Rich Repeat
`XP_057810335.1`	Pfam	`PF00560`	LRR_1	Repeat	139	161	1.2e-19	66.9	Leucine Rich Repeat
`XP_057810335.1`	Pfam	`PF00560`	LRR_1	Repeat	219	238	1.2e-19	66.9	Leucine Rich Repeat
`XP_057810335.1`	Pfam	`PF00560`	LRR_1	Repeat	266	283	1.2e-19	66.9	Leucine Rich Repeat
`XP_057810335.1`	Pfam	`PF00069`	Pkinase	Domain	637	905	6e-45	154.4	Protein kinase domain
`XP_057810335.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	638	906	8.5e-47	160.3	Protein tyrosine and serine/threonine kinase
`XP_057810336.1`	Pfam	`PF23598`	LRR_14	Repeat	82	169	1.2e-16	61.2	Leucine-rich repeat region
`XP_057810336.1`	Pfam	`PF00560`	LRR_1	Repeat	91	113	1e-19	67.0	Leucine Rich Repeat
`XP_057810336.1`	Pfam	`PF00560`	LRR_1	Repeat	115	137	1e-19	67.0	Leucine Rich Repeat
`XP_057810336.1`	Pfam	`PF00560`	LRR_1	Repeat	139	161	1e-19	67.0	Leucine Rich Repeat
`XP_057810336.1`	Pfam	`PF00560`	LRR_1	Repeat	219	238	1e-19	67.0	Leucine Rich Repeat
`XP_057810336.1`	Pfam	`PF00560`	LRR_1	Repeat	266	283	1e-19	67.0	Leucine Rich Repeat
`XP_057810336.1`	Pfam	`PF00069`	Pkinase	Domain	630	898	5.9e-45	154.4	Protein kinase domain
`XP_057810336.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	631	899	8.4e-47	160.4	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057954351.1
GGAGGAGGTGCTTGTTAGTTAATGGGGAGTGCCCGATGGACCAAGATGGCCTCAAAGTCTCCCTCTAAAAATTGACACCATAAAATGATATTCTTGAAAAAATCCCATCTCGTATTAAAGGTACTCAACCAATCCTGGACAAGTTGCCACTTAGTTTGTGTTGGATCATTTAAGTCATTAACAAGTTAATGAATGCAGTGTGGCCCATTTTACATATCAAACAATCTGAGCACAAGAGAAGCTTAGCTAGAGAGAGAAGG...

XM_057954352.1
CAAAGTCTCCCTCTAAAAATTGACACCATAAAATGATATTCTTGAAAAAATCCCATCTCGTATTAAAGGTACTCAACCAATCCTGGACAAGTTGCCACTTAGTTTGTGTTGGATCATTTAAGTCATTAACAAGTTAATGAATGCAGTGTGGCCCATTTTACATATCAAACAATCTGAGCACAAGAGAAGGTAACAAACTTGTATGTCTGCAGCTTAGCTAGAGAGAGAAGGCTACTTGAAACATGGACCATTGAAGCTTT...

CDS

3 records

下载 CDS FASTA

LOC131024815
ATGTGTTGGGCGATTCGTCTTTGTTGTCTCGTTGCTTTGGTTCGAGTTCTTGGTGTAGTAGCTTCGACGAATAATATAGATGATTATGTTGGTCTGAGGGCTTTGATGGATGGCTGGGATAACTTTCCACCAAATTGGGACGGCGCTGATCCATGTGGAAGTGGTTGGGAAGGGATCAGCTGCAACAACGGTGGTCGCGTTGATTCCATCACTTTAGCAAGCATAAATATAAGCGGTCAGCTAGCATCAGACATTGATAA...

Protein

3 records

下载 Protein FASTA

XP_057810334.1
MCWAIRLCCLVALVRVLGVVASTNNIDDYVGLRALMDGWDNFPPNWDGADPCGSGWEGISCNNGGRVDSITLASINISGQLASDIDKLSDLKILDLSYNTGITGELPSSIGNLKNLTSLIVVGCGFSGQIPPSIGSLQKLVYLSLNLNNFIGEIPASIGNLSNLFWLDIADNKLTGSIPVSKGSTPGLDMLVSAKHFHFGGNQLSGQIPPQLFSSKLPLKHLLLENNRLTGSIPSSLGLVQTLEVIRLDKNLLSGAVPDN...

XP_057810335.1
MCWAIRLCCLVALVRVLGVVASTNNIDDYVGLRALMDGWDNFPPNWDGADPCGSGWEGISCNNGGRVDSITLASINISGQLASDIDKLSDLKILDLSYNTGITGELPSSIGNLKNLTSLIVVGCGFSGQIPPSIGSLQKLVYLSLNLNNFIGEIPASIGNLSNLFWLDIADNKLTGSIPVSKGSTPGLDMLVSAKHFHFGGNQLSGQIPPQLFSSKLPLKHLLLENNRLTGSIPSSLGLVQTLEVIRLDKNLLSGAVPDN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器