当前解析结果
SmilChr05G002235| 统一新 Gene ID | SmilChr05G002235 |
|---|---|
| 名称 | SmilChr05G002235 |
| 描述 | high mobility group B protein 15-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 23952776 - 23958045 / + |
| NCBI Gene ID | LOC131024829 |
|---|---|
| GeneID | 131024829 |
| locus_tag | - |
| NCBI Name | LOC131024829 |
| 原始查询 | LOC131024829 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | high mobility group B protein 15-like |
| 产物 | high mobility group B protein 15-like |
| Arabidopsis | AT1G04880 (AT1G04880)HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:839388] identity=56.1; qcov=0.719; evalue=8.15e-108; confidence=high |
| Rice | Os02g0469900 (OsARID1)- identity=42.8; qcov=0.742; evalue=1.13e-83; confidence=medium |
| GO | GO:0003677 (DNA binding) |
| KEGG | - |
| Pfam | PF00505 (HMG_box); PF01388 (ARID); PF09011 (HMG_box_2); PF27637 (MNM1_beta) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024829 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057810351.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057810351.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057810351.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057810351.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057810351.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:23954391 |
CTT |
C |
2bp_deletion | frameshift_variant | 1 | B52 |
Chr5:23954391 |
CTT |
C |
2bp_deletion | CDS_variant | 1 | B52 |
Chr5:23956123 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C74 |
Chr5:23957205 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B104,B48 |
Chr5:23957560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B44,C74,C82 |
Chr5:23957694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,C28 |
Chr5:23957751 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810351.1PF01388
ARID 36-120 aa
PF27637
MNM1_beta 191-220 aa
PF09011
HMG_box_2 258-327 aa
PF00505
HMG_box 261-328 aa
XP_057810352.1PF01388
ARID 36-120 aa
PF27637
MNM1_beta 191-220 aa
PF09011
HMG_box_2 258-327 aa
PF00505
HMG_box 261-328 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810351.1 |
Pfam | PF01388 |
ARID | Domain | 36 | 120 | 5.8e-20 | 72.2 | ARID/BRIGHT DNA binding domain |
XP_057810351.1 |
Pfam | PF27637 |
MNM1_beta | Domain | 191 | 220 | 6.8e-11 | 42.3 | Metabolic network modulator 1 small beta sheet domain |
XP_057810351.1 |
Pfam | PF09011 |
HMG_box_2 | Domain | 258 | 327 | 2e-09 | 38.7 | HMG-box domain |
XP_057810351.1 |
Pfam | PF00505 |
HMG_box | Domain | 261 | 328 | 1.6e-11 | 45.2 | HMG (high mobility group) box |
XP_057810352.1 |
Pfam | PF01388 |
ARID | Domain | 36 | 120 | 5.8e-20 | 72.2 | ARID/BRIGHT DNA binding domain |
XP_057810352.1 |
Pfam | PF27637 |
MNM1_beta | Domain | 191 | 220 | 6.8e-11 | 42.3 | Metabolic network modulator 1 small beta sheet domain |
XP_057810352.1 |
Pfam | PF09011 |
HMG_box_2 | Domain | 258 | 327 | 2e-09 | 38.7 | HMG-box domain |
XP_057810352.1 |
Pfam | PF00505 |
HMG_box | Domain | 261 | 328 | 1.6e-11 | 45.2 | HMG (high mobility group) box |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。