当前解析结果
SmilChr05G003784| 统一新 Gene ID | SmilChr05G003784 |
|---|---|
| 名称 | SmilChr05G003784 |
| 描述 | SNF1-related protein kinase catalytic subunit alpha KIN10-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 51163611 - 51168018 / - |
| NCBI Gene ID | LOC131024845 |
|---|---|
| GeneID | 131024845 |
| locus_tag | - |
| NCBI Name | LOC131024845 |
| 原始查询 | LOC131024845 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | SNF1-related protein kinase catalytic subunit alpha KIN10-like |
| 产物 | SNF1-related protein kinase catalytic subunit alpha KIN10-like |
| Arabidopsis | AT3G29160 (KIN11)SNF1 kinase homolog 11 [Source:NCBI gene (formerly Entrezgene);Acc:822566] identity=81; qcov=0.479; evalue=7.91e-24; confidence=medium |
| Rice | Os05g0530500 (SNRK1A)- identity=70.5; qcov=0.504; evalue=6.94e-21; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024845 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057810362.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057810362.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057810362.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810362.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810362.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:51164978 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B17 |
Chr5:51165149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B3,C47 |
Chr5:51165164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr5:51166537 |
CT |
C |
1bp_deletion | frameshift_variant | 5 | A10,A3,A7,B135,D10 |
Chr5:51166537 |
CT |
C |
1bp_deletion | CDS_variant | 5 | A10,A3,A7,B135,D10 |
Chr5:51166543 |
A |
AT |
1bp_insertion | frameshift_variant | 6 | B137,B77,C35,C45,C70,D9 |
Chr5:51166627 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | D7 |
Chr5:51166627 |
C |
CT |
1bp_insertion | CDS_variant | 1 | D7 |
Chr5:51166659 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B54,C31,C37,C44 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
7 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。