当前解析结果
SmilChr05G003840| 统一新 Gene ID | SmilChr05G003840 |
|---|---|
| 名称 | SmilChr05G003840 |
| 描述 | endoribonuclease Dicer homolog 3a-like |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 51846027 - 51856633 / - |
| NCBI Gene ID | LOC131024895 |
|---|---|
| GeneID | 131024895 |
| locus_tag | - |
| NCBI Name | LOC131024895 |
| 原始查询 | LOC131024895 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | endoribonuclease Dicer homolog 3a-like |
| 产物 | endoribonuclease Dicer homolog 3a-like |
| Arabidopsis | AT3G43920 (DCL3)dicer-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:823508] identity=45.5; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0909200 (OsDCL3a)- identity=46.8; qcov=1; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0004525 (ribonuclease III activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0030422 (siRNA processing) |
| KEGG | - |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF00636 (Ribonuclease_3); PF02170 (PAZ); PF03368 (Dicer_dimer); PF04851 (ResIII); PF14622 (Ribonucleas_3_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024895 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057810425.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057810425.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057810425.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057810425.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057810425.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:51846233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr5:51846235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr5:51846264 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A10 |
Chr5:51846270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr5:51846330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,A6,C46,C49,C63 |
Chr5:51846338 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,A6,C46,C49,C63 |
Chr5:51846386 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr5:51847063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B49,C2 |
Chr5:51847085 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr5:51847095 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr5:51847127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,C50 |
Chr5:51847177 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810425.1PF04851
ResIII 39-203 aa
PF00270
DEAD 40-203 aa
PF00271
Helicase_C 413-517 aa
PF03368
Dicer_dimer 588-673 aa
PF02170
PAZ 933-1065 aa
PF00636
Ribonuclease_3 1107-1239 aa
PF14622
Ribonucleas_3_3 1298-1425 aa
PF00636
Ribonuclease_3 1319-1426 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810425.1 |
Pfam | PF04851 |
ResIII | Family | 39 | 203 | 7.2e-16 | 59.2 | Type III restriction enzyme, res subunit |
XP_057810425.1 |
Pfam | PF00270 |
DEAD | Domain | 40 | 203 | 1.9e-19 | 70.7 | DEAD/DEAH box helicase |
XP_057810425.1 |
Pfam | PF00271 |
Helicase_C | Domain | 413 | 517 | 1.8e-18 | 67.5 | Helicase conserved C-terminal domain |
XP_057810425.1 |
Pfam | PF03368 |
Dicer_dimer | Domain | 588 | 673 | 2.3e-25 | 89.1 | Dicer dimerisation domain |
XP_057810425.1 |
Pfam | PF02170 |
PAZ | Domain | 933 | 1065 | 2.6e-11 | 44.3 | PAZ domain |
XP_057810425.1 |
Pfam | PF00636 |
Ribonuclease_3 | Family | 1107 | 1239 | 3.2e-39 | 134.5 | Ribonuclease III domain |
XP_057810425.1 |
Pfam | PF14622 |
Ribonucleas_3_3 | Family | 1298 | 1425 | 4.4e-23 | 82.6 | Ribonuclease-III-like |
XP_057810425.1 |
Pfam | PF00636 |
Ribonuclease_3 | Family | 1319 | 1426 | 3.2e-39 | 134.5 | Ribonuclease III domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。