当前解析结果
SmilChr05G003889| 统一新 Gene ID | SmilChr05G003889 |
|---|---|
| 名称 | SmilChr05G003889 |
| 描述 | probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 52626752 - 52632542 / - |
| NCBI Gene ID | LOC131024908 |
|---|---|
| GeneID | 131024908 |
| locus_tag | - |
| NCBI Name | LOC131024908 |
| 原始查询 | LOC131024908 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic |
| 产物 | probable 1-deoxy-D-xylulose-5-phosphate synthase%2C chloroplastic |
| Arabidopsis | AT5G11380 (DXPS3)1-deoxy-D-xylulose 5-phosphate synthase 3 [Source:NCBI gene (formerly Entrezgene);Acc:831009] identity=66.9; qcov=1; evalue=0; confidence=high |
| Rice | Os06g0142900 (OsDXS2)- identity=64.1; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity); GO:0016114 (terpenoid biosynthetic process) |
| KEGG | smil00730 (Thiamine metabolism - Salvia miltiorrhiza (redroot sage)); smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02779 (Transket_pyr); PF02780 (Transketolase_C); PF13292 (DXP_synthase_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131024908 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057810445.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057810445.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057810446.1 |
| 4 | Cytosol | 细胞质基质 | 0.80000 | XP_057810446.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057810445.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:52626992 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:52627013 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B43 |
Chr5:52627676 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B39,B70,B82 |
Chr5:52627684 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr5:52628054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr5:52628255 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B38,B7,B80 |
Chr5:52628503 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B29,B69 |
Chr5:52628503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B29,B69 |
Chr5:52629796 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr5:52630095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr5:52630156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810445.1PF13292
DXP_synthase_N 77-358 aa
PF02779
Transket_pyr 393-554 aa
PF02780
Transketolase_C 571-694 aa
XP_057810446.1PF13292
DXP_synthase_N 2-280 aa
PF02779
Transket_pyr 315-476 aa
PF02780
Transketolase_C 493-616 aa
XP_057810447.1PF13292
DXP_synthase_N 2-280 aa
PF02779
Transket_pyr 315-476 aa
PF02780
Transketolase_C 493-616 aa
XP_057810448.1PF13292
DXP_synthase_N 2-280 aa
PF02779
Transket_pyr 315-476 aa
PF02780
Transketolase_C 493-616 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810445.1 |
Pfam | PF13292 |
DXP_synthase_N | Family | 77 | 358 | 2.5e-72 | 244.2 | 1-deoxy-D-xylulose-5-phosphate synthase |
XP_057810445.1 |
Pfam | PF02779 |
Transket_pyr | Domain | 393 | 554 | 5.3e-38 | 131.1 | Transketolase, pyrimidine binding domain |
XP_057810445.1 |
Pfam | PF02780 |
Transketolase_C | Domain | 571 | 694 | 9.8e-29 | 100.5 | Transketolase, C-terminal domain |
XP_057810446.1 |
Pfam | PF13292 |
DXP_synthase_N | Family | 2 | 280 | 8.7e-72 | 242.4 | 1-deoxy-D-xylulose-5-phosphate synthase |
XP_057810446.1 |
Pfam | PF02779 |
Transket_pyr | Domain | 315 | 476 | 4.2e-38 | 131.4 | Transketolase, pyrimidine binding domain |
XP_057810446.1 |
Pfam | PF02780 |
Transketolase_C | Domain | 493 | 616 | 7.5e-29 | 100.9 | Transketolase, C-terminal domain |
XP_057810447.1 |
Pfam | PF13292 |
DXP_synthase_N | Family | 2 | 280 | 8.7e-72 | 242.4 | 1-deoxy-D-xylulose-5-phosphate synthase |
XP_057810447.1 |
Pfam | PF02779 |
Transket_pyr | Domain | 315 | 476 | 4.2e-38 | 131.4 | Transketolase, pyrimidine binding domain |
XP_057810447.1 |
Pfam | PF02780 |
Transketolase_C | Domain | 493 | 616 | 7.5e-29 | 100.9 | Transketolase, C-terminal domain |
XP_057810448.1 |
Pfam | PF13292 |
DXP_synthase_N | Family | 2 | 280 | 8.7e-72 | 242.4 | 1-deoxy-D-xylulose-5-phosphate synthase |
XP_057810448.1 |
Pfam | PF02779 |
Transket_pyr | Domain | 315 | 476 | 4.2e-38 | 131.4 | Transketolase, pyrimidine binding domain |
XP_057810448.1 |
Pfam | PF02780 |
Transketolase_C | Domain | 493 | 616 | 7.5e-29 | 100.9 | Transketolase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。