Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003935`

染色体: Chr05 坐标: 53108462-53110877 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003935`
名称	SmilChr05G003935
描述	pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	53108462 - 53110877 / `+`

ID 对照

NCBI Gene ID	`LOC131024910`
GeneID	`131024910`
locus_tag	`-`
NCBI Name	`LOC131024910`
原始查询	`LOC131024910`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At3g53360%2C mitochondrial-like
Arabidopsis	`AT3G53360` (AT3G53360) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824504] identity=32.8; qcov=0.973; evalue=6.93e-114; confidence=low
Rice	`Os02g0680500` - identity=48; qcov=0.537; evalue=1.54e-120; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2)
InterPro	-
eggNOG	-
NR	GeneID:131024910

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057810449.1`
2	Chloroplast	叶绿体	0.20000	`XP_057810449.1`
3	Nucleus	细胞核	0.00000	`XP_057810449.1`
4	Chromosome	染色体	0.00000	`XP_057810449.1`
5	Centromere	着丝粒	0.00000	`XP_057810449.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:53108583`	`C`	`CT`	1bp_insertion	frameshift_variant	4	A24,B124,B80,C78
`Chr5:53108583`	`C`	`CT`	1bp_insertion	CDS_variant	4	A24,B124,B80,C78
`Chr5:53108619`	`C`	`CT`	1bp_insertion	frameshift_variant	13	B22,B23,B36,B44,B45,B77,B82,B83,B87,C15,C3,C52,C84
`Chr5:53108818`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,B24
`Chr5:53109280`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B67,C58,C87
`Chr5:53109281`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:53109284`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr5:53109473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B86,C29
`Chr5:53109582`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B67,C58,C87
`Chr5:53109616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr5:53109803`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C31,C77
`Chr5:53109807`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810449.1

698 aa

349

698

PPR

PPR_2

PPR

PPR_2

PPR

PF01535 PPR 78-102 aa PF13041 PPR_2 104-150 aa PF01535 PPR 106-132 aa PF01535 PPR 178-204 aa PF01535 PPR 206-236 aa PF01535 PPR 279-300 aa PF01535 PPR 351-377 aa PF13041 PPR_2 376-424 aa PF01535 PPR 379-409 aa PF01535 PPR 453-477 aa PF01535 PPR 482-510 aa PF01535 PPR 517-545 aa PF01535 PPR 555-579 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810449.1`	Pfam	`PF01535`	PPR	Repeat	78	102	9.5e-67	217.4	PPR repeat
`XP_057810449.1`	Pfam	`PF13041`	PPR_2	Repeat	104	150	1.2e-61	205.4	PPR repeat family
`XP_057810449.1`	Pfam	`PF01535`	PPR	Repeat	106	132	9.5e-67	217.4	PPR repeat
`XP_057810449.1`	Pfam	`PF01535`	PPR	Repeat	178	204	9.5e-67	217.4	PPR repeat
`XP_057810449.1`	Pfam	`PF01535`	PPR	Repeat	206	236	9.5e-67	217.4	PPR repeat
`XP_057810449.1`	Pfam	`PF01535`	PPR	Repeat	279	300	9.5e-67	217.4	PPR repeat
`XP_057810449.1`	Pfam	`PF01535`	PPR	Repeat	351	377	9.5e-67	217.4	PPR repeat
`XP_057810449.1`	Pfam	`PF13041`	PPR_2	Repeat	376	424	1.2e-61	205.4	PPR repeat family
`XP_057810449.1`	Pfam	`PF01535`	PPR	Repeat	379	409	9.5e-67	217.4	PPR repeat
`XP_057810449.1`	Pfam	`PF01535`	PPR	Repeat	453	477	9.5e-67	217.4	PPR repeat
`XP_057810449.1`	Pfam	`PF01535`	PPR	Repeat	482	510	9.5e-67	217.4	PPR repeat
`XP_057810449.1`	Pfam	`PF01535`	PPR	Repeat	517	545	9.5e-67	217.4	PPR repeat
`XP_057810449.1`	Pfam	`PF01535`	PPR	Repeat	555	579	9.5e-67	217.4	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954466.1
TTTTTGCTTTTTCATTCTAAAAAAAATGATTGAGCGAAAGACACTCTCACGAATCTTTATCTGGGCCGTCTTCAAAGTTTGAAACATGTTATCTGTGCAATCACCACTCCAAAAATGAAGTCTTTGCATTTGAATTCTCCCACATTAATATCACCATCTCTCGCAAACACTCCAAATCCCAAAATCAGCCGCTCATTCCCTCAACATTCCTCACCGCCGGAAAACATTTTCTCAGACCAACTTCTTTCACTGCGTAGATG...

CDS

1 records

下载 CDS FASTA

LOC131024910
ATGAAGTCTTTGCATTTGAATTCTCCCACATTAATATCACCATCTCTCGCAAACACTCCAAATCCCAAAATCAGCCGCTCATTCCCTCAACATTCCTCACCGCCGGAAAACATTTTCTCAGACCAACTTCTTTCACTGCGTAGATGCGTCCAAACCCAAGACCTCAAAACGGGATCTTCCCTTCACGCCACAATTCTCAAATCAGGGCTCGAAGCCGATGTTTTCATCGCCAATTCATTACTCAACATGTACTCAAAATG...

Protein

1 records

下载 Protein FASTA

XP_057810449.1
MKSLHLNSPTLISPSLANTPNPKISRSFPQHSSPPENIFSDQLLSLRRCVQTQDLKTGSSLHATILKSGLEADVFIANSLLNMYSKCDCVHHARNVFDQMPHRTVVSWTAMMSAYHRSSLPDEAMSLFSRMPAHLNPNEFTLAVLLQACALRGDVNLVEAVHSHAIRSGLASDSFLQNCLIDAYAKAGMLTAAEKLLLRLCRRDVVSWTCVVSGCVKCGEAERGLSLFCRMQEDGVAPSEIAMVTALQACSEIGNGRIMG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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