Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003907`

染色体: Chr05 坐标: 52806271-52809932 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003907`
名称	SmilChr05G003907
描述	pentatricopeptide repeat-containing protein At5g25630-like
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	52806271 - 52809932 / `-`

ID 对照

NCBI Gene ID	`LOC131024915`
GeneID	`131024915`
locus_tag	`-`
NCBI Name	`LOC131024915`
原始查询	`LOC131024915`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At5g25630-like
产物	pentatricopeptide repeat-containing protein At5g25630-like
Arabidopsis	`AT5G25630` (AT5G25630) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832639] identity=54.2; qcov=0.924; evalue=0; confidence=high
Rice	`Os01g0228400` - identity=52.9; qcov=0.733; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131024915

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057810458.1`
2	Mitochondrion	线粒体	0.60000	`XP_057810458.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057810458.1`
4	Nucleus	细胞核	0.00000	`XP_057810458.1`
5	Chromosome	染色体	0.00000	`XP_057810458.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:52806580`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B111,C39,C69
`Chr5:52806637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B57,C40
`Chr5:52806789`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr5:52806823`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C3
`Chr5:52806885`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D1,D10
`Chr5:52806915`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B27,B4
`Chr5:52806977`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:52807038`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B76
`Chr5:52807064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B125,B13,B33,B99,C87
`Chr5:52807065`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B26,D11
`Chr5:52807071`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,C64,C66
`Chr5:52807113`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A9,B65,B92,C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810458.1

629 aa

314

629

PPR_long

PPR_3

TPR_24

PPR_3

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_2

PPR_3

PPR_long

PPR_2

PPR

PPR_3

PPR

PPR_long

PPR_3

PPR_1

PPR_2

PPR

PF17177 PPR_long 85-186 aa PF13812 PPR_3 89-147 aa PF23276 TPR_24 123-178 aa PF13812 PPR_3 123-183 aa PF13041 PPR_2 135-182 aa PF01535 PPR 138-168 aa PF13812 PPR_3 159-220 aa PF12854 PPR_1 167-198 aa PF13041 PPR_2 170-220 aa PF01535 PPR 173-200 aa PF23276 TPR_24 175-262 aa PF13812 PPR_3 202-255 aa PF12854 PPR_1 205-234 aa PF13041 PPR_2 206-251 aa PF01535 PPR 210-239 aa PF13812 PPR_3 230-288 aa PF13041 PPR_2 241-290 aa PF01535 PPR 244-274 aa PF13812 PPR_3 266-322 aa PF12854 PPR_1 272-305 aa PF01535 PPR 280-309 aa PF13041 PPR_2 280-323 aa PF13812 PPR_3 302-358 aa PF17177 PPR_long 302-431 aa PF13041 PPR_2 311-357 aa PF13041 PPR_2 346-394 aa PF01535 PPR 349-379 aa PF13812 PPR_3 370-425 aa PF01535 PPR 385-414 aa PF17177 PPR_long 402-503 aa PF13812 PPR_3 405-464 aa PF12854 PPR_1 413-445 aa PF13041 PPR_2 417-464 aa PF01535 PPR 419-449 aa PF01535 PPR 455-483 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810458.1`	Pfam	`PF17177`	PPR_long	Repeat	85	186	7.9e-39	133.9	Pentacotripeptide-repeat region of PRORP
`XP_057810458.1`	Pfam	`PF13812`	PPR_3	Repeat	89	147	1.3e-81	269.3	Pentatricopeptide repeat domain
`XP_057810458.1`	Pfam	`PF23276`	TPR_24	Repeat	123	178	2.6e-31	109.0	Pentatricopeptide repeat-containing protein
`XP_057810458.1`	Pfam	`PF13812`	PPR_3	Repeat	123	183	1.3e-81	269.3	Pentatricopeptide repeat domain
`XP_057810458.1`	Pfam	`PF13041`	PPR_2	Repeat	135	182	9e-104	340.2	PPR repeat family
`XP_057810458.1`	Pfam	`PF01535`	PPR	Repeat	138	168	8e-72	233.3	PPR repeat
`XP_057810458.1`	Pfam	`PF13812`	PPR_3	Repeat	159	220	1.3e-81	269.3	Pentatricopeptide repeat domain
`XP_057810458.1`	Pfam	`PF12854`	PPR_1	Repeat	167	198	1.7e-78	258.7	PPR repeat
`XP_057810458.1`	Pfam	`PF13041`	PPR_2	Repeat	170	220	9e-104	340.2	PPR repeat family
`XP_057810458.1`	Pfam	`PF01535`	PPR	Repeat	173	200	8e-72	233.3	PPR repeat
`XP_057810458.1`	Pfam	`PF23276`	TPR_24	Repeat	175	262	2.6e-31	109.0	Pentatricopeptide repeat-containing protein
`XP_057810458.1`	Pfam	`PF13812`	PPR_3	Repeat	202	255	1.3e-81	269.3	Pentatricopeptide repeat domain
`XP_057810458.1`	Pfam	`PF12854`	PPR_1	Repeat	205	234	1.7e-78	258.7	PPR repeat
`XP_057810458.1`	Pfam	`PF13041`	PPR_2	Repeat	206	251	9e-104	340.2	PPR repeat family
`XP_057810458.1`	Pfam	`PF01535`	PPR	Repeat	210	239	8e-72	233.3	PPR repeat
`XP_057810458.1`	Pfam	`PF13812`	PPR_3	Repeat	230	288	1.3e-81	269.3	Pentatricopeptide repeat domain
`XP_057810458.1`	Pfam	`PF13041`	PPR_2	Repeat	241	290	9e-104	340.2	PPR repeat family
`XP_057810458.1`	Pfam	`PF01535`	PPR	Repeat	244	274	8e-72	233.3	PPR repeat
`XP_057810458.1`	Pfam	`PF13812`	PPR_3	Repeat	266	322	1.3e-81	269.3	Pentatricopeptide repeat domain
`XP_057810458.1`	Pfam	`PF12854`	PPR_1	Repeat	272	305	1.7e-78	258.7	PPR repeat
`XP_057810458.1`	Pfam	`PF01535`	PPR	Repeat	280	309	8e-72	233.3	PPR repeat
`XP_057810458.1`	Pfam	`PF13041`	PPR_2	Repeat	280	323	9e-104	340.2	PPR repeat family
`XP_057810458.1`	Pfam	`PF13812`	PPR_3	Repeat	302	358	1.3e-81	269.3	Pentatricopeptide repeat domain
`XP_057810458.1`	Pfam	`PF17177`	PPR_long	Repeat	302	431	7.9e-39	133.9	Pentacotripeptide-repeat region of PRORP
`XP_057810458.1`	Pfam	`PF13041`	PPR_2	Repeat	311	357	9e-104	340.2	PPR repeat family
`XP_057810458.1`	Pfam	`PF13041`	PPR_2	Repeat	346	394	9e-104	340.2	PPR repeat family
`XP_057810458.1`	Pfam	`PF01535`	PPR	Repeat	349	379	8e-72	233.3	PPR repeat
`XP_057810458.1`	Pfam	`PF13812`	PPR_3	Repeat	370	425	1.3e-81	269.3	Pentatricopeptide repeat domain
`XP_057810458.1`	Pfam	`PF01535`	PPR	Repeat	385	414	8e-72	233.3	PPR repeat
`XP_057810458.1`	Pfam	`PF17177`	PPR_long	Repeat	402	503	7.9e-39	133.9	Pentacotripeptide-repeat region of PRORP
`XP_057810458.1`	Pfam	`PF13812`	PPR_3	Repeat	405	464	1.3e-81	269.3	Pentatricopeptide repeat domain
`XP_057810458.1`	Pfam	`PF12854`	PPR_1	Repeat	413	445	1.7e-78	258.7	PPR repeat
`XP_057810458.1`	Pfam	`PF13041`	PPR_2	Repeat	417	464	9e-104	340.2	PPR repeat family
`XP_057810458.1`	Pfam	`PF01535`	PPR	Repeat	419	449	8e-72	233.3	PPR repeat
`XP_057810458.1`	Pfam	`PF01535`	PPR	Repeat	455	483	8e-72	233.3	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954475.1
ATAATAATAGCAGAAAAGGAAAACGCAATATCCTCATTTTGTTTGCGTGTTTTTTTCTGCAGCCCCTTATCTCCTAATATTCCCAGTTCAAATTGCATCGATAAACATGTGGATAAGATTTATTTATTTTTAGTTTTTTGTTTCTCGCAGGAATGTTGGAATCCACACGCTATAAATTTATCTTTTTTCCGCTGATTTTTAATCTCATCGAACATTTGCATGGAACGATAGCCAGAATGTTCAGTATCACAAGGAACCAA...

CDS

1 records

下载 CDS FASTA

LOC131024915
ATGATGGGTTATGTGGAGAAATTTGATAAAGAGAAGGCCAATATTGAGATAAGCAGCACAAAACAAGGCAGCAATTTAGACAAACAAGTTCAAGAGCTTCCCATAAATGATAGGTCTCTTGATGAGAAATTACAGTTTCAGCCAATGCCCGGATCGACTCCTTGCACCATCTGCACGAGCGGGGAGAGTTGTAAAATTGTTCGTTCGAGGACCAAGTTGATGAACATTTTGTTGGAACGAGGGAAGCCGCAGGAAGTCCA...

Protein

1 records

下载 Protein FASTA

XP_057810458.1
MMGYVEKFDKEKANIEISSTKQGSNLDKQVQELPINDRSLDEKLQFQPMPGSTPCTICTSGESCKIVRSRTKLMNILLERGKPQEVQSVFNNLIQGGHKPSLVTYTTLLASLTVQKRFDHIHSIISEVQKNGMEPDPVFFNAVVNAFSESGDMDGAMRMLSKMKDHGIKPTTSTYNTLIKGYGIAGKPEESLKIMEFMSREENTKPNVRTYNVLVRAWCNRKNVEEAWDVVSKMLASGIQPDAVTYNTLVTSYVQNKQTG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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