Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002382`

染色体: Chr01 坐标: 41013243-41015133 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002382`
名称	SmilChr01G002382
描述	pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	41013243 - 41015133 / `-`

ID 对照

NCBI Gene ID	`LOC131024939`
GeneID	`131024939`
locus_tag	`-`
NCBI Name	`LOC131024939`
原始查询	`LOC131024939`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At2g38420, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At2g38420%2C mitochondrial-like
Arabidopsis	`AT2G38420` (AT2G38420) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818423] identity=35.2; qcov=0.909; evalue=3.03e-89; confidence=medium
Rice	`Os12g0109900` (OsRBP) - identity=30.2; qcov=0.634; evalue=1.17e-34; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3)
InterPro	-
eggNOG	-
NR	GeneID:131024939

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057810491.1`
2	Nucleus	细胞核	0.00000	`XP_057810491.1`
3	Chromosome	染色体	0.00000	`XP_057810491.1`
4	Centromere	着丝粒	0.00000	`XP_057810491.1`
5	Chromatin	染色质	0.00000	`XP_057810491.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:41013560`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B82,C80,C81,D5
`Chr1:41013574`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B50,B73,C73,D4
`Chr1:41013575`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B68,B83,C42
`Chr1:41013579`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B22,D7,D8
`Chr1:41013593`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B82,C80,C81,D5
`Chr1:41013616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr1:41013646`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B50,B73,D4
`Chr1:41013732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr1:41013739`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B56,B96,C23
`Chr1:41013780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C18,C50
`Chr1:41013798`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B106,B66,C79,C81
`Chr1:41013799`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810491.1

506 aa

253

506

PPR

PPR_3

PPR

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PF01535 PPR 149-167 aa PF01535 PPR 216-245 aa PF13812 PPR_3 277-332 aa PF01535 PPR 294-317 aa PF13041 PPR_2 323-370 aa PF01535 PPR 326-354 aa PF13812 PPR_3 345-400 aa PF12854 PPR_1 354-386 aa PF13041 PPR_2 357-404 aa PF01535 PPR 361-390 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810491.1`	Pfam	`PF01535`	PPR	Repeat	149	167	3.3e-27	93.5	PPR repeat
`XP_057810491.1`	Pfam	`PF01535`	PPR	Repeat	216	245	3.3e-27	93.5	PPR repeat
`XP_057810491.1`	Pfam	`PF13812`	PPR_3	Repeat	277	332	6.4e-22	78.1	Pentatricopeptide repeat domain
`XP_057810491.1`	Pfam	`PF01535`	PPR	Repeat	294	317	3.3e-27	93.5	PPR repeat
`XP_057810491.1`	Pfam	`PF13041`	PPR_2	Repeat	323	370	3.6e-38	130.2	PPR repeat family
`XP_057810491.1`	Pfam	`PF01535`	PPR	Repeat	326	354	3.3e-27	93.5	PPR repeat
`XP_057810491.1`	Pfam	`PF13812`	PPR_3	Repeat	345	400	6.4e-22	78.1	Pentatricopeptide repeat domain
`XP_057810491.1`	Pfam	`PF12854`	PPR_1	Repeat	354	386	4.8e-22	78.1	PPR repeat
`XP_057810491.1`	Pfam	`PF13041`	PPR_2	Repeat	357	404	3.6e-38	130.2	PPR repeat family
`XP_057810491.1`	Pfam	`PF01535`	PPR	Repeat	361	390	3.3e-27	93.5	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954508.1
TATTTCATGCCCTTATTCTTTTTGAAAAATGTTGTATTGGCTTAACTATATTTGGGCACGATGTTGAAGGGAGTAAAGCGATTCATAGCAGCTCAAGAGATACATCCATGGCGACACAAAATCTCTGCAAATCAACCCACAACCAATCTGTTCCGCAACTCAGCTGCATCATTCTCATCTTCTTCTTGCAATTTCTACATAAGAAAAAGAAGAAAGTGGCCAATTCAACCGCACAAGAAACAGCTGCCCGATTTTCTCGC...

CDS

1 records

下载 CDS FASTA

LOC131024939
ATGTTGAAGGGAGTAAAGCGATTCATAGCAGCTCAAGAGATACATCCATGGCGACACAAAATCTCTGCAAATCAACCCACAACCAATCTGTTCCGCAACTCAGCTGCATCATTCTCATCTTCTTCTTGCAATTTCTACATAAGAAAAAGAAGAAAGTGGCCAATTCAACCGCACAAGAAACAGCTGCCCGATTTTCTCGCTTTCCAATTAGCTAAGAAATCCTTCAAAAAATCGATCAAGAAATCCAAATCCCATAATCT...

Protein

1 records

下载 Protein FASTA

XP_057810491.1
MLKGVKRFIAAQEIHPWRHKISANQPTTNLFRNSAASFSSSSCNFYIRKRRKWPIQPHKKQLPDFLAFQLAKKSFKKSIKKSKSHNLLPDLINACAAYEVEPSPQSYHFLFKILIQNRPANCRDQILQVLDHIEKFESFETPECVFIDLIKFYGENGMFDDAVELFSTTPKFRCEPSVETLNALLSVLCKNEKGLEIVPKLLVKSQSMSIRIEESTFEILIRALCGIGDSSNALALLNQMVEEGFDLDQKVCSLMLATMC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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