Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003901`

染色体: Chr05 坐标: 52754124-52757484 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003901`
名称	SmilChr05G003901
描述	uncharacterized SmilChr05G003901
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	52754124 - 52757484 / `-`

ID 对照

NCBI Gene ID	`LOC131024942`
GeneID	`131024942`
locus_tag	`-`
NCBI Name	`LOC131024942`
原始查询	`LOC131024942`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817108]; symbol=AT2G25670; hit=AT2G25670; species=arabidopsis; confidence=medium
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817108]; symbol=AT2G25670; hit=AT2G25670; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G25670` (AT2G25670) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817108] identity=58.5; qcov=1.01; evalue=1.17e-42; confidence=medium
Rice	`Os01g0179300` (BIP128) - identity=49.9; qcov=1.06; evalue=1.07e-32; confidence=medium
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131024942

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057810494.1`
2	Cytoplasm	细胞质	0.80000	`XP_057810494.1`
3	Chloroplast	叶绿体	0.20000	`XP_057810490.1`
4	Nucleus	细胞核	0.00000	`XP_057810490.1`
5	Chromosome	染色体	0.00000	`XP_057810490.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:52754397`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr5:52754589`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	A22
`Chr5:52754589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr5:52754639`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr5:52754777`	`T`	`TA`	1bp_insertion	frameshift_variant	3	B44,B77,D4
`Chr5:52754777`	`T`	`TA`	1bp_insertion	CDS_variant	3	B44,B77,D4
`Chr5:52754926`	`ACT`	`A`	2bp_deletion	frameshift_variant	32	A1,A24,B106,B108,B12,B122,B124,B129,B14,B15,B24,B28,B31,B53,B69,B88,B94,B99,C13,C23,C27,C28,C29,C30,C48,C50,C6,C77,C79,C81,C83,D11

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057954514.1
GGCTTCCTCTCTCACGTTATCTGCACCACACCTCCGTCTCCATTTCTGAAACCCTCTCTCTCTCTACATTTCTGTCTCTATAGATAAACATCACTGGCTTTTGATAATTCGTGTGATTGGAAATGGTCGGAGGCGGGAATAGAAGGGATGAGGCGTCGTTTACTGTGAGCAACACCAATGTTTTTGCGGCTTTGGAGAGTTTGAGGAAGAAGAAGAAGTCTGACAAAGAGAAGGGGTCCTCCAAGGGGGGCAAGGGCACC...

XM_057954511.1
GGCTTCCTCTCTCACGTTATCTGCACCACACCTCCGTCTCCATTTCTGAAACCCTCTCTCTCTCTACATTTCTGTCTCTATAGATAAACATCACTGTATGTATATGCAACACCTATACGCACATTAAACACACACACAGCGAAAGGATATAGATACGGACATCTTTCTTTCACAAATCGTAACCCTAACACACCTCTCTCATTTCGATTTTTTTTTTGTTGTTGTCAATTTGGAACCCTAATTCTCTGTTAGCCTTAGCT...

CDS

7 records

下载 CDS FASTA

LOC131024942
ATGGTCGGAGGCGGGAATAGAAGGGATGAGGCGTCGTTTACTGTGAGCAACACCAATGTTTTTGCGGCTTTGGAGAGTTTGAGGAAGAAGAAGAAGTCTGACAAAGAGAAGGGGTCCTCCAAGGGGGGCAAGGGCACCTCGAAAGCTGCTGGGAGACAGAATGCCGAAGCAGAGAAGCAGGTGTTCTGGGCTCCGGCACCTTTGACGGTGAAGTCGTGGGCGGATGTTGATGATGAGGATGATGATGATTACTATGCCAC...

Protein

7 records

下载 Protein FASTA

XP_057810490.1
MVGGGNRRDEASFTVSNTNVFAALESLRKKKKSDKEKGSSKGGKGTSKAAGRQNAEAEKQVFWAPAPLTVKSWADVDDEDDDDYYATTAPPQAIWGGSGLNAPEETHKPDVVEESESEDELLDEGDDDVEDGHDQEPEVEEQPEPLVTKPAEATSAPKETERQLSKKERRKKELAELEAILADFGVNPKEKAEDEASSGNILPLFNYKFGESPRKSRLIYSMIAEIFSRYALCCSLFFQLDLVLLLYLLFFFWAWRKNRG...

XP_057810492.1
MVGGGNRRDEASFTVSNTNVFAALESLRKKKKSDKEKGSSKGGKGTSKAAGRQNAEAEKQVFWAPAPLTVKSWADVDDEDDDDYYATTAPPQAIWGGSGLNAPEETHKPDVVEESESEDELLDEGDDDVEDGHDQEPEVEEQPEPLVTKPAEATSAPKETERQLSKKERRKKELAELEAILADFGVNPKEKAEDEASSGNILPLFNYKFGESPRKSRLIYSMIAEIFSRYALCCSLFFQLDLVLLLYLLFFFWAWRKNRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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