Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G003867`

染色体: Chr05 坐标: 52270079-52271838 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G003867`
名称	SmilChr05G003867
描述	uncharacterized SmilChr05G003867
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	52270079 - 52271838 / `-`

ID 对照

NCBI Gene ID	`LOC131024956`
GeneID	`131024956`
locus_tag	`-`
NCBI Name	`LOC131024956`
原始查询	`LOC131024956`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:832628]; symbol=AT5G25530; hit=AT5G25530; species=arabidopsis; confidence=high
产物	DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:832628]; symbol=AT5G25530; hit=AT5G25530; species=arabidopsis; confidence=high
Arabidopsis	`AT5G25530` (AT5G25530) DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:832628] identity=67; qcov=1.14; evalue=4.68e-159; confidence=high
Rice	`Os05g0562300` (OsDjB7) - identity=52.3; qcov=1.24; evalue=3.4e-128; confidence=high
GO	GO:0005829 (cytosol); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051087 (protein-folding chaperone binding)
KEGG	-
Pfam	PF00226 (DnaJ); PF01556 (DnaJ_C)
InterPro	-
eggNOG	-
NR	GeneID:131024956

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057810528.1`
2	Cytoplasm	细胞质	0.20000	`XP_057810528.1`
3	Nucleus	细胞核	0.00000	`XP_057810528.1`
4	Chromosome	染色体	0.00000	`XP_057810528.1`
5	Centromere	着丝粒	0.00000	`XP_057810528.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:52270259`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr5:52270498`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B42,B43
`Chr5:52271098`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B8
`Chr5:52271098`	`TC`	`T`	1bp_deletion	CDS_variant	1	B8
`Chr5:52271178`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B112,C19,C41
`Chr5:52271207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr5:52271259`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B24,B53,C2,C20
`Chr5:52271486`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B112,C19,C41
`Chr5:52271571`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B63,B86,C29

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810528.1

297 aa

148

297

DnaJ

DnaJ_C

PF00226 DnaJ 4-67 aa PF01556 DnaJ_C 123-280 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810528.1`	Pfam	`PF00226`	DnaJ	Domain	4	67	9.6e-30	103.2	DnaJ domain
`XP_057810528.1`	Pfam	`PF01556`	DnaJ_C	Domain	123	280	7.3e-38	130.7	DnaJ C terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954545.1
TAACTAACAAAGCACATCCCCCCCCCCCAAAGAAACACAGAGGGGGATTCCAAATTTTTTATTTCTTTCTCGTATTCAAAAATCCAGAATTTGCAAGCTTTCTTATCTCTGGAATGCATTGAACCCTTGAGAATTTCTTGAAGTTCTTTTCTCATATTCTTGAAGATTCAAGGGATTTTCATGTAATAATCTAAGAAGAGAATCCACCATATCGTGAAGAGAGGGAGAGATGGGGTTGGATTATTATGAAATACTGACGG...

CDS

1 records

下载 CDS FASTA

LOC131024956
ATGGGGTTGGATTATTATGAAATACTGACGGTGGAGAGGGGCGCAACAGAGGAAGATCTGAAGAAGGCCTACAGAAAACTGGCGATGAGATGGCATCCAGACAAGAATCCCAACGACAAAGACGAAGCCGAGGCCATGTTCAAGCAAATCTCTGAAGCCTACGAAGTGTTGAGTGATCCTCAGAAGAGGCAAGTGTATGATCAGTACGGCGAAGAGGGCCTGAAAGACGGGCCAGCGCCCGGCTCAGCCGGAAGCCCGGA...

Protein

1 records

下载 Protein FASTA

XP_057810528.1
MGLDYYEILTVERGATEEDLKKAYRKLAMRWHPDKNPNDKDEAEAMFKQISEAYEVLSDPQKRQVYDQYGEEGLKDGPAPGSAGSPDKFNPRNAEDIFAEFFGTSPFGYGDGTSMLKKPPPVESMLPCDLDELYTGSTRKMKISRQVVDPNGRLRTESEILTIEVKPGWRKGTKITFPDKGNQQMNQLPADLVFVIDEKPHDVFTRDGNDLMMSHCVTLAEAIGGTTVEFTTVDGRSISVPVACIVSPGYEHVVEGEGMP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器