当前解析结果
SmilChr01G002389| 统一新 Gene ID | SmilChr01G002389 |
|---|---|
| 名称 | SmilChr01G002389 |
| 描述 | L-lactate dehydrogenase A-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 41159727 - 41162434 / + |
| NCBI Gene ID | LOC131025007 |
|---|---|
| GeneID | 131025007 |
| locus_tag | - |
| NCBI Name | LOC131025007 |
| 原始查询 | LOC131025007 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | L-lactate dehydrogenase A-like |
| 产物 | L-lactate dehydrogenase A-like |
| Arabidopsis | AT4G17260 (AT4G17260)Lactate/malate dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827440] identity=76.3; qcov=1; evalue=0; confidence=high |
| Rice | Os02g0105400 (LDH)- identity=65.7; qcov=0.983; evalue=2.9e-162; confidence=high |
| GO | GO:0004459 (L-lactate dehydrogenase (NAD+) activity); GO:0005737 (cytoplasm); GO:0019752 (carboxylic acid metabolic process) |
| KEGG | smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00056 (Ldh_1_N); PF02866 (Ldh_1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025007 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057810588.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057810588.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057810588.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057810588.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057810588.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:41159907 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B5,C71,D9 |
Chr1:41160036 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,C71 |
Chr1:41160054 |
CAA |
C |
2bp_deletion | frameshift_variant | 2 | B125,C71 |
Chr1:41160054 |
CAA |
C |
2bp_deletion | CDS_variant | 2 | B125,C71 |
Chr1:41160084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,C71 |
Chr1:41160086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,C71 |
Chr1:41160107 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A18,B124,B6,C67 |
Chr1:41160111 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,C71 |
Chr1:41160119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B125 |
Chr1:41160125 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,C71 |
Chr1:41160134 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,C71,D8 |
Chr1:41160163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B110,B124,B16,C67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810588.1PF00056
Ldh_1_N 38-177 aa
PF02866
Ldh_1_C 180-340 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810588.1 |
Pfam | PF00056 |
Ldh_1_N | Domain | 38 | 177 | 3.4e-47 | 160.7 | lactate/malate dehydrogenase, NAD binding domain |
XP_057810588.1 |
Pfam | PF02866 |
Ldh_1_C | Domain | 180 | 340 | 3.4e-32 | 112.5 | lactate/malate dehydrogenase, alpha/beta C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。