Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004002`

染色体: Chr05 坐标: 53933777-53936439 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004002`
名称	SmilChr05G004002
描述	caffeoylshikimate esterase
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	53933777 - 53936439 / `-`

ID 对照

NCBI Gene ID	`LOC131025070`
GeneID	`131025070`
locus_tag	`-`
NCBI Name	`LOC131025070`
原始查询	`LOC131025070`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	caffeoylshikimate esterase
产物	caffeoylshikimate esterase
Arabidopsis	`AT1G77420` (AT1G77420) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844079] identity=66.4; qcov=0.937; evalue=2.46e-177; confidence=high
Rice	`Os01g0688200` - identity=67.3; qcov=0.897; evalue=7.67e-170; confidence=high
GO	GO:0016020 (membrane); GO:0016298 (lipase activity)
KEGG	smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00561 (Abhydrolase_1); PF00756 (Esterase); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131025070

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057810654.1`
2	Chloroplast membrane	叶绿体膜	0.40000	`XP_057810654.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057810654.1`
4	Nucleus	细胞核	0.00000	`XP_057810654.1`
5	Chromosome	染色体	0.00000	`XP_057810654.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:53934435`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,B66,C2
`Chr5:53934686`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:53934710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,B99
`Chr5:53934768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr5:53935030`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C21,C3
`Chr5:53935187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,A16,B103,B139,C4
`Chr5:53935211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,C23
`Chr5:53935214`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,C22
`Chr5:53935730`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr5:53935986`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,B62,B88
`Chr5:53936068`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B55,C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810654.1

378 aa

189

378

Hydrolase_4

Abhydrolase_1

Abhydrolase_6

Esterase

PF12146 Hydrolase_4 115-356 aa PF00561 Abhydrolase_1 118-250 aa PF12697 Abhydrolase_6 121-358 aa PF00756 Esterase 192-240 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810654.1`	Pfam	`PF12146`	Hydrolase_4	Domain	115	356	6.9e-63	212.9	Serine aminopeptidase, S33
`XP_057810654.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	118	250	2.1e-19	70.9	alpha/beta hydrolase fold
`XP_057810654.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	121	358	3.4e-11	44.9	Alpha/beta hydrolase family
`XP_057810654.1`	Pfam	`PF00756`	Esterase	Domain	192	240	1.4e-05	25.7	Putative esterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057954671.1
CAAAATAAACATGAAATAAATACATTCACATGTTAAGAGTGAATATTCTATATTGACATGTGAGATATCTCAAGATTCCTAAATTCAAAATATTCCCGGAGAAAGCCGCCGTCCAACCCCAAAATTCGCCTACACCGGCAACTTTCGTGTATTCTCGAATCTTGATATAAATAATCTTAAAAAAATAAATTTGCATAATTGGACGGCGCACACATTTGAGCTATTTGGGTAGTCTCTTTTCCGTCCCATTTTCTACTGGG...

CDS

1 records

下载 CDS FASTA

LOC131025070
ATGGCCTCAACCCTCCACCCTCGCTGGGAATATACCCACTTTCGCCGGAATATTCCCACACCCTTTTTCCACCGTCGGACATTACCGGTGATCGTGGCGGCGCAGAAAAAGCCCAAGATCGATGGCGTCAGCGACGAGCTCAACTCCATCGCCTCCCAGAATTTGGACCACGCCCCCGCTCGAAGAAGGGTGCGATCGGCTTTCGCCAATGTTCAGCAGCACCTCGATCATATACTGTTTAAGATGTCTCCAGCTGGGAT...

Protein

1 records

下载 Protein FASTA

XP_057810654.1
MASTLHPRWEYTHFRRNIPTPFFHRRTLPVIVAAQKKPKIDGVSDELNSIASQNLDHAPARRRVRSAFANVQQHLDHILFKMSPAGIRTEEWYEVNSEGQEIFCKSWLPKPGVRIKGALCFCHGYGDTCTFFFEGIAKHIAASGYGVYAIDHPGFGLSEGLHGYIPSFDAVVDNVIEQFKIMKGRPEISGLPRFIFGQSMGGAIALKALLKAPNEWDGIVLVAPMCKISEEMTPPVPLQQVLIFLSKLMPQAKLVPQKDI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器