当前解析结果
SmilChr05G004017| 统一新 Gene ID | SmilChr05G004017 |
|---|---|
| 名称 | SmilChr05G004017 |
| 描述 | probable leucine-rich repeat receptor-like protein kinase At1g68400 |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 54158917 - 54164189 / - |
| NCBI Gene ID | LOC131025082 |
|---|---|
| GeneID | 131025082 |
| locus_tag | - |
| NCBI Name | LOC131025082 |
| 原始查询 | LOC131025082 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable leucine-rich repeat receptor-like protein kinase At1g68400 |
| 产物 | probable leucine-rich repeat receptor-like protein kinase At1g68400 |
| Arabidopsis | AT1G68400 (AT1G68400)leucine-rich repeat transmembrane protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:843169] identity=59.1; qcov=0.936; evalue=0; confidence=high |
| Rice | Os07g0681100- identity=46.4; qcov=0.891; evalue=7.78e-155; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131025082 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057810667.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057810667.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057810667.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057810667.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057810667.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:54159182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B48,C29,C33 |
Chr5:54161471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B3,C10,C18,C63,D8 |
Chr5:54161498 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr5:54161579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr5:54161597 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr5:54161659 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr5:54161678 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,B35,B77 |
Chr5:54162810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr5:54162813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B29,C24,D2 |
Chr5:54162902 |
TCG |
T |
2bp_deletion | frameshift_variant | 27 | A1,A10,B10,B106,B107,B121,B133,B136,B137,B32,B38,B39,B54,B72,B85,B91,B93,B94,C31,C34,C36,C37,C53,C61,C62,C83,D4 |
Chr5:54162934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
Chr5:54162956 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057810667.1PF08263
LRRNT_2 89-128 aa
PF00560
LRR_1 179-201 aa
PF13855
LRR_8 179-237 aa
PF00560
LRR_1 204-224 aa
PF00560
LRR_1 249-270 aa
PF00069
Pkinase 409-655 aa
PF07714
PK_Tyr_Ser-Thr 409-662 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057810667.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 89 | 128 | 5.4e-10 | 40.1 | Leucine rich repeat N-terminal domain |
XP_057810667.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 179 | 201 | 3.4e-12 | 44.7 | Leucine Rich Repeat |
XP_057810667.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 179 | 237 | 8.3e-08 | 32.6 | Leucine rich repeat |
XP_057810667.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 204 | 224 | 3.4e-12 | 44.7 | Leucine Rich Repeat |
XP_057810667.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 249 | 270 | 3.4e-12 | 44.7 | Leucine Rich Repeat |
XP_057810667.1 |
Pfam | PF00069 |
Pkinase | Domain | 409 | 655 | 4.8e-29 | 102.3 | Protein kinase domain |
XP_057810667.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 409 | 662 | 3.4e-31 | 109.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。