Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr05G004021`

染色体: Chr05 坐标: 54204910-54208677 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr05G004021`
名称	SmilChr05G004021
描述	uncharacterized SmilChr05G004021
染色体 / SeqID	Chr05 / NC_080391.1
坐标与链方向	54204910 - 54208677 / `+`

ID 对照

NCBI Gene ID	`LOC131025086`
GeneID	`131025086`
locus_tag	`-`
NCBI Name	`LOC131025086`
原始查询	`LOC131025086`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AT1G15030; symbol=AT1G15030; hit=AT1G15030; species=arabidopsis; confidence=high
产物	AT1G15030; symbol=AT1G15030; hit=AT1G15030; species=arabidopsis; confidence=high
Arabidopsis	`AT1G15030` (AT1G15030) - identity=60.3; qcov=1.01; evalue=9.76e-110; confidence=high
Rice	`Os01g0306900` - identity=52.2; qcov=0.951; evalue=4.53e-93; confidence=high
GO	-
KEGG	-
Pfam	PF05623 (DUF789)
InterPro	-
eggNOG	-
NR	GeneID:131025086

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057810670.1`
2	Nucleus	细胞核	0.60000	`XP_057810670.1`
3	Cytosol	细胞质基质	0.60000	`XP_057810670.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057810674.1`
5	Chromosome	染色体	0.00000	`XP_057810670.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr5:54205451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B126,B51,B57
`Chr5:54205549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:54205676`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A22,B56,B96,C32,C68
`Chr5:54206425`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B30,C35,C43
`Chr5:54206553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,B100,B14
`Chr5:54207442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr5:54207462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B129,C83,D3
`Chr5:54207536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,B35
`Chr5:54207672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B138,D11
`Chr5:54207883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr5:54208006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr5:54208183`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057810670.1

396 aa

198

396

DUF789

PF05623 DUF789 72-393 aa

XP_057810671.1

395 aa

198

395

DUF789

PF05623 DUF789 72-392 aa

XP_057810672.1

321 aa

160

321

DUF789

PF05623 DUF789 27-318 aa

XP_057810674.1

304 aa

152

304

DUF789

PF05623 DUF789 15-301 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057810670.1`	Pfam	`PF05623`	DUF789	Family	72	393	1.2e-106	357.5	Protein of unknown function (DUF789)
`XP_057810671.1`	Pfam	`PF05623`	DUF789	Family	72	392	1.1e-105	354.3	Protein of unknown function (DUF789)
`XP_057810672.1`	Pfam	`PF05623`	DUF789	Family	27	318	6.4e-99	332.1	Protein of unknown function (DUF789)
`XP_057810674.1`	Pfam	`PF05623`	DUF789	Family	15	301	1.2e-98	331.1	Protein of unknown function (DUF789)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057954687.1
GGTGGCAAATGCGTCATTTCATAGTCACCACACCAACGCCAAAAACCGCGTCGTTTACAGCGCGCAATACAAAACCATTTCCCCCATCATCAACTCCACCTTTTTCCCTTCCAAATAATTATCTCATAAATTAATCATTTATTTTAATTTAATTTAAGCTTCTCTTCTATTCCTTTCTTCTTATACCCATCCATTTTCCTCCATCTCTTTCTCTCTCTATATCTACACCCCCATATACATACATTCTGCATAGCAATTTC...

XM_057954688.1
AAATGCGTCATTTCATAGTCACCACACCAACGCCAAAAACCGCGTCGTTTACAGCGCGCAATACAAAACCATTTCCCCCATCATCAACTCCACCTTTTTCCCTTCCAAATAATTATCTCATAAATTAATCATTTATTTTAATTTAATTTAAGCTTCTCTTCTATTCCTTTCTTCTTATACCCATCCATTTTCCTCCATCTCTTTCTCTCTCTATATCTACACCCCCATATACATACATTCTGCATAGCAATTTCGATCCC...

CDS

4 records

下载 CDS FASTA

LOC131025086
ATGTTGGGGCCAGGGTTGCAGTTCAATAGGAGTAGAAACGGCGAAGATCGGTTTTACAGCGCGGCGAGGGCTCGACTGAGTCAAGATTATTTGCGTAGGGCTCAGAGTGACGTCACCCCTAGCCGGTCAAGGAGTCGGCCGGATGAGCCGCTGCCGGAGAAGTCGAACGCAGAAATTCCGGCGTCGCCGCCGGTGTCGGAGCCCTCTCCTTTGTGTAATCTGGAGAGGTTCTTGGAATCGGTCACGCCATCGTTACCGGC...

Protein

4 records

下载 Protein FASTA

XP_057810670.1
MLGPGLQFNRSRNGEDRFYSAARARLSQDYLRRAQSDVTPSRSRSRPDEPLPEKSNAEIPASPPVSEPSPLCNLERFLESVTPSLPAQYLSKMKVRSWRTCDVEYQPFFVLSDLWESFKEWSAYGVGVPLILNDRDGVVQYYVPYLSGIQLYADLSKSTAKLRRLGEESDGEYFRDSSSDGSSDSEQERGGMNYSREQPSYLHSSNSPLTVDQMAVRAHQMAFQEGFSSDEGESGSSQGCLLFEYLERDPPYSREPLANK...

XP_057810671.1
MLGPGLQFNRSRNGEDRFYSAARARLSQDYLRRAQSDVTPSRSRSRPDEPLPEKSNAEIPASPPVSEPSPLCNLERFLESVTPSLPAQYLSKMKVRSWRTCDVEYQPFFVLSDLWESFKEWSAYGVGVPLILNDRDGVVQYYVPYLSGIQLYADLSKSTAKLRLGEESDGEYFRDSSSDGSSDSEQERGGMNYSREQPSYLHSSNSPLTVDQMAVRAHQMAFQEGFSSDEGESGSSQGCLLFEYLERDPPYSREPLANKI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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